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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGGGCGCCGCCGGCGGCGGGTGGCGGCCGCAGCGTGGCCTCCCCGAGCGCGCCGTCTCCGTCCTCCGCGCTTGGCTCTTCGAGCATTTCCTCCACCCgtaagtaatcaaattttgaattttaaaatttaaatttgtagttgatttttggggttttttcttattttccttttttaaaacaagccttagtttttaagcc...

Basic information

species Oryza sativa
transcript LOC_Os12g06340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06340.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G458728_T07 (Zea mays), 5'ss of exon 3
-CGGTG-GGCGCCGCCGGCGGCGGGTGGCGGCCGCAGCGTGGCCTCCCCGAGCGCGCCGTCTCCGTCCTCCGCGCTTGGCTCTTCGAGCATTTCCTCCACCCgtaagtaatcaaattttgaattttaaaatttaaatttgtagttgatttttggggttttttcttattttccttttttaaaacaagccttagtttttaagcc-
 |||   |  || |  |||||||  |||||||| ||||| ||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||| ||||||| |||  ||   ||   | | | |  ||  |    | |  |   | |    |   |        |    |   | |  |  | || | ||  |       
TCGGCATGATGCAG--GGCGGCGCCTGGCGGCCCCAGCGCGGCCTCCCCGAGCGCTCCGTCTCCATCCTCCGCGCCTGGCTCTTCGAGCACTTCCTGCACCCgtgagttctcccgttcc-agtctcatcatgcatgcatctcatccttctcactgcagtgcaggctctgcagtagctcatcatgatcccttgtactctcctgt

upper sequence: LOC_Os12g06340.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA03G36070.1 (Glycine max), 5'ss of exon 4
CGGTGGGCGCCGCCGGCGGCGGGTGGCGGCCGCAGCGTGGCCTCCCCGAGCGCGCCGTCTCCGTCCTCCGCGCTTGGCTCTTCGAGCATTTCCTCCACCCgtaagta-----------atcaaattttgaattttaaaatttaaatt--tgtagttgatttttggggttttttct--tattttccttttttaaaacaagccttagtttttaagcc--------------------------------------
 ||       |     |   |  ||| | || ||| | ||  | || ||  |  |||| || || || || |||||||||||||| || |||||||||||||||| |           || ||| ||     |||  | ||||   |  ||||  | ||| | |      |||     |||||   | ||||     |   ||| ||   |                                          
TGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCgtaagcacacttacatttataaaagttctctctttttattttattctcttgtaagtaattatggaaaaagtttacaacattttaaatgtttactgttaat-ttaattcaaagataatacatgttgtgctgaaataactttgtttggatttcag

upper sequence: LOC_Os12g06340.2 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 3
CGGTGGGCGCCGCCGGCGGCGGGTGGCGGCCGCAGCGTGGCCTCCCCGAGCGCGCCGTCTCCGTCCTCCGCGCTTGGCTCTTCGAGCATTTCCTCCACCCgtaagtaatcaaattttgaattttaaaatttaaatttgtagttgatttttggggttttttcttattttccttttttaaaacaagccttagtttttaagcc
         |  ||      |  ||| | || || ||||| ||||| || || |||||||| || ||||| |||||||||||||| || || || || |||||||||| | | | |  |    |  | |     |    | | ||            | ||| | ||  |||| ||  ||  ||                
TTCAACATCCTTCCAATAATGCTTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTTCGAACACTTTCTTCATCCgtaagtaacccactatacacacatgcactacttttcatcactggaacacaaactcagtctctaagttgtctttcttttaattag----------------

upper sequence: LOC_Os12g06340.2 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 10
-CGGTGGGCGCCGCCGGCGGCGGGTGGCGGCCGCAGCGTGGCCTCCCCGAGCGCGCCGTCTCCGTCCTCCGCGCTTGGCTCTTCGAGCATTTCCTCCACCCgtaagtaatcaaattttgaattttaaaatttaaatttgtagttgatttttggggttttttcttattttccttttttaaaacaagccttagtttttaagcc
  ||   |  ||  | |    |  ||| | || ||| | ||  | || ||  |  | || || || || |||||||||||||| || || |||||||||||||||| |        ||  ||||||   ||    ||   ||   | |  |     ||  |   || ||    || |    ||                  
TGGGAATGATCCAACAG-AATGTTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTCTTTGAACACTTCCTCCACCCgtaagcacctttcaattttattttatttttccccttcaaagcccagtaattccagttgctgagatattttggttgtgtttcag-----------------