1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGgtagtttgatcatgtgtaactgaaatggctcatgggtgattgggtgtattcaatttcatttccttgttataggtttcatcagaccacctcaaatagaagg...
species | Oryza sativa |
transcript | LOC_Os12g04020.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTC-ACGGAAG GTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGEST: gi|88737690|gb|CI761198.1|CI761198
genomic: ATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGgtagtttgat ... tggttttcagGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGG
EST: ATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTCCCANGGAAG GTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGGEST: gi|58682225|gb|CK070912.1|CK070912
genomic: ATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGgtagtttgat ... tggttttcagGTTTTATGGGACCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACGG
EST: ATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAG GTTTTATGGGACCCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACG
genomic: ATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGgtagtttgat ... tggttttcagGTTTTATGGGA-CCTTCCAAGGTTTGTGAAGATAGTTGAAGTTGGACCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTTTCACAGCAGTGCTCATTCATGGCATATGCAAGGCCAATATACTGATTCATCCTGCAATGGGGTGGATATGGAGTTCAGAGCTCTTCCACGGAAGgtagtttgatcatgtgtaactgaaatggctcatgggtgattgggtgtattcaatttcatttccttgttataggtttcatcagaccacctcaaatagaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacctc