1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtataacatttctgaaaaataatttgtcactgagtaacaaattattttgaacacttcttcacaactacgtcaaaaatgcagtaacgtttacatgatatatttctgctgcag
species | Oryza sativa |
transcript | LOC_Os12g03860.6 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGGEST: gi|33795182|gb|CF323464.1|CF323464
genomic: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtataacatt ... tctgctgcagGCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGG
EST: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGGEST: gi|88571513|gb|CI662886.1|CI662886
genomic: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtataacatt ... tctgctgcagGCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGG
EST: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGTGGTTTCACATCGATCTEST: gi|33692622|gb|CF320861.1|CF320861
genomic: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtataacatt ... tctgctgcagGCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCT
EST: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGGEST: gi|33677540|gb|CF305779.1|CF305779
genomic: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtataacatt ... tctgctgcagGCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGG
EST: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGG
genomic: GCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtataacatt ... tctgctgcagGCGCATCATATATGATCGGTCGTGGTTTCGCATCGATCTTGTGGGGTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtataacatttctgaaaaataatttgtcactgagtaacaaattattttgaacacttcttcacaactacgtcaaaaatgcagtaacgtttacatgatatatttctgctgcag
- - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA