Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGgtaaaagttcaccatggcagccattgcgcgctccttatccgaggccaatatgcgcatcattgtatgggttatttatcctcatcgatttgttatctgttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g03822.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g03822.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G458888_T02 (Zea mays), 5'ss of exon 3
AACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGgtaaaagttcaccatggcagccattgcgcgctccttatccgaggccaatatgcgcatcattgta-tgggttatttatcctcatcgatttg--ttatctgttgcag
|||| ||||| ||| |||||||||| ||||||||||| ||||| |||||| ||||||| ||||||||| |||| |||  |||||||||| | |||||||||||   ||| | | |   ||   || | | |  ||| |  | |   | |    |  | |    | |   | || | |  |||   | |       ||||||||||
AACCGGGTGTAGATGCACTGGAAGATGGGGAGGAGCTTCAGTTTGATCCTGAGGCTTATAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtatt-gtttatcttcatagggctttcccacctctttttggtgcttatttcaggagttaggacaatatatgatctgttttcaattactaaaaccttctgttgcag

upper sequence: LOC_Os12g03822.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AC208327.4_FGT003 (Zea mays), 5'ss of exon 3
AACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGgtaaaagttcaccatggcagccattgcgcgctccttatccgaggccaatatgcgcatcattgtatgggttatt-tatcctcatcgatttg--ttatctgttgcag
|||| ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |||| |||  |||||||||| | |||||||||| ||  ||  ||      |      | | ||  ||          | |    |  ||||   |  |  |||| | |  ||||    |       ||  ||||||
AACCGGGTGTAGATACACTGGAAGATGGGGAGGAGCTGCAGTTTGATCCTCAGGCTTACAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtgaagtttatcctcatgggttccccccctctttttggtgcttattacttcaggagtcataacaatgtatattctgttttcatttcatgaaaccttcctttgcag

upper sequence: LOC_Os12g03822.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G458888_T01 (Zea mays), 5'ss of exon 2
AACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGgtaaaagttcaccatggcagccattgcgcgctccttatccgaggccaatatgcgcatcattgta-tgggttatttatcctcatcgatttg--ttatctgttgcag
|||| ||||| ||| |||||||||| ||||||||||| ||||| |||||| ||||||| ||||||||| |||| |||  |||||||||| | |||||||||||   ||| | | |   ||   || | | |  ||| |  | |   | |    |  | |    | |   | || | |  |||   | |       ||||||    
AACCGGGTGTAGATGCACTGGAAGATGGGGAGGAGCTTCAGTTTGATCCTGAGGCTTATAATTATCTCCGAGGTTTTGGCATTGGCTGGTCTTGCTTGAGgtatt-gtttatcttcatagggctttcccacctctttttggtgcttatttcaggagttaggacaatatatgatctgttttcaattactaaaaccttctgtt----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596309|gb|CK006837.1|CK006837
EST:     CAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAG                         TTTCGATGTTGTGCGGGATCAACTTGGGCTCGTGCGATCGGAATTCCCACA
genomic: CAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGgtaaaagttc ... tctgttgcagTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACA