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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATGTTAATCATTGCCTAATTCCACTTCGTATTTTTGCACATATATTACCTTTTgtgagtacttctattgattttcttaaaaattgcataaagtctattgattttattaaaattgcagaaagtttcagcaaagtgactcttctagctacatgaa...

Basic information

species Oryza sativa
transcript LOC_Os12g02970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g02970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G166062_T01 (Zea mays), 5'ss of exon 8
TGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATGTTAATCATTGCCTAATTCCACTTCGTATTTTTGCACATATATTACCTTTTgtgagtacttctattgattttcttaaaaattgcataaagtctattgatt--ttattaaaattgcagaaagtttcagcaaagtgactcttct-agctacatgaa------
 || ||| |  |    ||| | | |||    | |  |  || | | | ||    |  | | | |   | ||   | |     |||          |   |    || | |       | ||||      ||||||   | | ||||  |   |      || |||      | ||   | | |  |||  | ||  ||||         
-GTGAAGGC-CATCCTGAGCAAGGCAACCCGCACTTCGTGTGC-GACGTGCGCGTGCTCGTCAAGCCCTACAAGG-AGAAGGGCAAGGTCCCCGGCAGGTTCAGgtccgttctcccttcttctct---gttgcat--tgcccattgcctacctgcatgcatcgcattctcatccacatacgcgcttctcttcagtcacattgcaattgc

upper sequence: LOC_Os12g02970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G535911_T03 (Zea mays), 5'ss of exon 8
-------------------------------------------------------TGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATGTTAATCATTGCCTAATTCCACTTCGTATTTTTGCACATATATTACCTTTTgtgagtacttctattgattttcttaaaaattgcataaagtctattgattttattaaaattgcagaaagtttcagcaaagtgactcttctagctacatgaa
                                                        |||||||| ||||||||||||| ||||||||||  || |||||||   |||        |    |||  ||  ||    |||| |||    | |||   |   | |   |     ||| || |  | ||  |          |   |   |||  ||||||                                      
GTGAAGGCCATCCTAAGCAAGGCAACCCGCACTTCGTGTGCGACGTGCGCGTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGGCAGGTTCAGgtccgtt--------ctcccttcttctctgttgcattgcccattgcctgcct---gcatgcatcgc-----attctcatccacatc-cgcgcttctcttcagtcacattgcaattgc--------------------------------------

upper sequence: LOC_Os12g02970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G531064_T01 (Zea mays), 5'ss of exon 4
TGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATGTTAATCATTGCCTAATTCCACTTCGTATTTTTGCACATATATTACCTTTTgtgagtacttctattgattttcttaaaaattgcataa--agtctattgatt--ttattaaaattgcagaaagtttcagcaaagtgactcttct-agctacatgaa--
 || ||| |  |    ||| | | |||    | |  |  |  | | | ||    |  | | | |   | ||   | |     |||          |   |    || | |       | ||||      ||||||     | | ||||  |   |      || |||      | ||     | |  |||  | ||  ||||     
-GTGAAGGC-CATCCTGAGCAAGGCAACCCGCACTTCGTGCGC-GACGTGCGCGTGCTCGTCAAGCCCTACAAGG-AGAAGGGCAAGGTCCCCGGCAGGTTCAGgtccgttctcccttcttctct---gttgcattgccggcccattgcctacctgcatgcatcgcattctcatccacatccgcgcttctcttcagtcacattgcaa

upper sequence: LOC_Os12g02970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G353762_T01 (Zea mays), 5'ss of exon 8
TGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATGTTAATCATTGCCTAATTCCACTTCGTATTTTTGCACATATATTACCTTTTgtgagtacttctattgatt-ttcttaaaaattgcataaagtctattgatt--ttattaaaattgcagaaagtttcagcaaagtgactcttct-agctacatgaa------
||  | |||||||   |  |||| |||    | |  || || | | |  |    |  | | | |   | ||   |             |   | ||   |  |   |  ||| ||     |||||     ||||||   | | ||||  |   |      || |||      | ||     | |  |||  | ||  ||||         
TGA-AGGCCATACTGAGC-AAGGGCAACCCGCACTTCATGTGC-GACGCGCGCGTGCTCGTCAAGCCCTACAAGGAG-----AAGGGCAAGGTCCCCGGTAGGTTCAGgtctgttctcccttcttctctgttgcat--tgcccattgcctgcctgcatgcatcgcattctcatccacatccgcgcttctcttcagtcacattgcaattgc

upper sequence: LOC_Os12g02970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G044004_T03 (Zea mays), 5'ss of exon 3
-------------------------------------------------------TGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATGTTAATCATTGCCTA-ATTCCA--CTTCGTATTTTTGCACATATATTACCTTTTgtgag--tacttctattgattttcttaaaaattgcataaagtctattgattttattaaaattgcagaaagtttcagcaaagtgactcttctagctacatgaa
                                                        |||||||| ||||||||||||| |||||||||| ||| |||||||   ||    | | ||||  || |||  ||||  ||  || | |  |   | |    | | |   |     | |   |  || ||  ||  | |   |   | ||  || |  |    ||||||                                    
TGAAGATCATCCTCAGCAAGGGCAACCCGCACTTCGTTTGCGACGCTCGCGTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGACAGGTTCAGgtccgtcg--cctcgcctgcatcccatccttctcatcgttcctcggaccctccaacatatcacattgacagtttccgtgctcgtagtaaacggaagcatcattttttttctggtttggttgcag------------------------------------

upper sequence: LOC_Os12g02970.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G346113_T02 (Zea mays), 5'ss of exon 3
-------------------------------------------------------TGTCAAGCCATACAAGGAGAAGGACAAGGTCCCCAACAAGTTCAGGCATGTTAATCATTG--CCTAATTCCACTTCGTATT-----------TTTGCACATATATTACCTTTTgtgagtacttctattgattttcttaaaa---attgcata--aagtctattgattttattaa-aattgcagaaagtttcagcaaagtgactcttctagctacatgaa------------------
                                                        |||||||| ||||||||||||| |||||||||| ||| |||||||   |||   | ||   |    || ||  | | |||             ||| |||  ||  | || |    || ||    |   |    ||  ||   | ||||      ||   ||| || | |  | |  | | |       |   |||  |  |||| |  |    | |                   
TGAAGGCCATCCTGAGCAAGGGCAACCCGCACTTCGTGTGCGACGCCCGCGTGCTCGTCAAGCCCTACAAGGAGAAGGGCAAGGTCCCCGACAGGTTCAGgtccgttctcccttcttctccgttgcatattgcattgccattgcctgcctgcgcatgcatcgcattctcatcgttctctcttcagtcacattgcaatgcactgcacgttgcgttgcttgtttgtttcgatagcttccgttgccacctaaaaaaagcttcttttttcggttttatcgttttgtctggttgcag