1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTGTGCCGCTCCTCCACGACGGGGAGCACTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAGgtccgtaccaatcatttttttcctcgtctacgcgcttttgatcctacctagataatgattctatttttgggatggggattgttaatttcgtcccgccgaa...
species | Oryza sativa |
transcript | LOC_Os12g02120.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAG GTATGAATTATGCTATCATTAGTGATAGCTTGATTGTTGGCTCGCAACCTCEST: gi|88725534|gb|CI748793.1|CI748793
genomic: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAGgtccgtacca ... tggaatgtagGTATGAATTATGCTATCATTAGTGATAGCTTGATTGTTGGCTCGCAACCTC
EST: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAG GTATGAATTATGCTATCATTAGTGATAGCTTGATTGTTGGCTCGCAACCTCEST: gi|29621076|gb|CB626087.1|CB626087
genomic: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAGgtccgtacca ... tggaatgtagGTATGAATTATGCTATCATTAGTGATAGCTTGATTGTTGGCTCGCAACCTC
EST: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAG GTATGAATTATGCTATCATTAGTGATAGCTTGATTGTTGGCTCGCAACCTC
genomic: CGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAGgtccgtacca ... tggaatgtagGTATGAATTATGCTATCATTAGTGATAGCTTGATTGTTGGCTCGCAACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTGCCGCTCCTCCACGACGGGGAGCACTAGGATGGAGGACTACAACACCGCCATGAAGAGAATGATGCGCAATCCCTACGAATACCACCATGATTTAGgtccgtaccaatcatttttttcctcgtctacgcgcttttgatcctacctagataatgattctatttttgggatggggattgttaatttcgtcccgccgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccgcc