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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagctaatttatttcagtattcagttatctaggatttatctgttctctgaaacatggttgttgatatctaaaatcgtgtgtagaactatcagct...

Basic information

species Oryza sativa
transcript LOC_Os12g01580.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G890665_T02 (Zea mays), 5'ss of exon 3
CTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaag-ctaatttatttcagtattcagttatctaggatttatctgttctctgaaacatggttgttgatatctaaaatcgtgtgtagaactatcagct-
 ||||||||||||||||||||||||||||| |||||  ||||||  || || |||||  |||| |||||||| ||  || ||||| | ||| | ||||| ||||||||  | ||||||||    |  |||| | |||||||| ||| | ||||||  ||| || | ||||  |       |   || |          | | 
GTCAACATCCTTGGCTCTAGCTGCTGGCATTGGATTACTGGAAATGGTAGCTCTGATTGTTGGATCTGGGACCCTGATGAACATCATTGGTATTCCTGTTgtacgtaaaaccaatttattctcttgctcaggtttctaggatctatttcttctcttcaacttgat-gttggcactgggtgtta-gtattctttagggtgttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|570085|gb|D40934.1|D40934
EST:     CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC                         GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
EST: gi|29639600|gb|CB644609.1|CB644609
EST:     CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC                         GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
EST: gi|117243617|gb|CT843150.1|CT843150
EST:     CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC                         GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTTAGGGCATAT
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT