1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ATATTTGCATCCGATAGCTTTCTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatgatcccatcttgccccttttgctgcacaatttactggaaggtttttaaattttatagaaaatttcaggcttttgtaaaatttttgcactttaacggtataagttagcttttcatgtaaaatactagtgaacaacttgcctggtgctttcttctgccctttgtgcag
species | Oryza sativa |
transcript | LOC_Os12g01140.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29630119|gb|CB635128.1|CB635128
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29681859|gb|CB678134.1|CB678134
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29624448|gb|CB629459.1|CB629459
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29641853|gb|CB646860.1|CB646860
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|2317379|gb|C22433.1|C22433
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29628293|gb|CB633304.1|CB633304
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29613611|gb|CB618624.1|CB618624
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29678744|gb|CB675019.1|CB675019
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29627346|gb|CB632357.1|CB632357
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29630466|gb|CB635475.1|CB635475
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|2317377|gb|C22431.1|C22431
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|29624450|gb|CB629461.1|CB629461
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|58593934|gb|CF992242.1|CF992242
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGAEST: gi|58592396|gb|CF990704.1|CF990704
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGGCCTGAAACTGATCGTGCAACAGTTAGGAAGEST: gi|29646710|gb|CB651717.1|CB651717
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAG
EST: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAG GTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
genomic: CTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatga ... ctttgtgcagGTTTCTTCAAGGCCCTGAAACTGATCGTGCAACAGTTAGGAAGATAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTTGCATCCGATAGCTTTCTGCAATTGACAGAATACAACCGTGAAGAAATATTAGGGAGAAACTGCAGgtaatgatgatcccatcttgccccttttgctgcacaatttactggaaggtttttaaattttatagaaaatttcaggcttttgtaaaatttttgcactttaacggtataagttagcttttcatgtaaaatactagtgaacaacttgcctggtgctttcttctgccctttgtgcag
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG