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AAGATTGGTCTGGGAGCTTCTTATGGGACTCTCGGGCTGATGATGTTCGTTTTAATGTATTTGGGATTTCTTCATACCGGCAGAATCAAAGAGAGGTAAGgttagtagaagttatctatatttttatgttggacactgcttaaacaactaagaagagtagaagttatctttttttatgttggacactgcttacaactacg...
species | Oryza sativa |
transcript | LOC_Os11g48090.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTAATGTATTTGGGATTTCTTCATACCGGCAGAATC-AA-AGA-G--AG ATAATCAATGGCATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCTEST: gi|58671155|gb|CK059841.1|CK059841
genomic: TTTAATGTATTTGGGATTTCTTCATACCGGCAGAATCAAAGAGAGGTAAGgttagtagaa ... aaccttccagATAATCAATGCCATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCT
EST: TTCATACCGGCAGAATC-AA-AGA-G--AG ATAATCAATGCCATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCTEST: gi|29673292|gb|CB669567.1|CB669567
genomic: TTCATACCGGCAGAATCAAAGAGAGGTAAGgttagtagaa ... aaccttccagATAATCAATGCCATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCT
EST: TTTAATGTATTTGGGATTTCTTCATACCGGCAGAATC-AA-AGA-G--AG ATAATCAATGCCATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCT
genomic: TTTAATGTATTTGGGATTTCTTCATACCGGCAGAATCAAAGAGAGGTAAGgttagtagaa ... aaccttccagATAATCAATGCCATCATGAGTGGAAGAGATGTACTGGTCATAATGGCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATTGGTCTGGGAGCTTCTTATGGGACTCTCGGGCTGATGATGTTCGTTTTAATGTATTTGGGATTTCTTCATACCGGCAGAATCAAAGAGAGGTAAGgttagtagaagttatctatatttttatgttggacactgcttaaacaactaagaagagtagaagttatctttttttatgttggacactgcttacaactacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG