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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGTTCGCGCCATGGCCGACGGCGCGACGGCGGCCATCGTCGTCATCAACCCCAACAATCCCTGCGGCGCGGTGTACTCTGCACAGCACCTTTTTCAGgtaagtgatcatttaactgcacacttaacatatatataaatgtaggtaatactagaaagttctacattgtgaaacggatggagtattatatgtcttcaga...

Basic information

species Oryza sativa
transcript LOC_Os11g42510.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g42510.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G006480_T01 (Zea mays), 5'ss of exon 3
CGGCGTTCGCGCCATGGCCGACGGCGCGACGGCGGCCATCGTCGTCATCAACCCCAACAATCCCTGCGGCGCGGTGTACTCTGCACAGCACCTTTTTCAGgtaagtgatcatttaactgcacact---taacatatatataaatgtaggtaatactagaa-----agttctacattgtgaaacggatggagtattatatgtcttcaga------------
|||||| |||||  ||||||||| ||| ||||| ||| |||||||||||||||||||||| || |||||||| || ||||| || || |||||    ||||| || | |    | | ||   | |   | |  |  | | |||  | | | |||    ||     |||||   | ||    |  |    || || ||    ||  | |            
CGGCGTGCGCGCGCTGGCCGACGCCGCCACGGCCGCCCTCGTCGTCATCAACCCCAACAACCCGTGCGGCGCCGTCTACTCCGCTCACCACCTCCGCCAGgtgagcgctgcgctgattggttattagttcatctgcaaacaaagctcgctcatatccaaatgccaagttcatgaatgatcgatcgtccaagaataatgca-ctgaaaatgaaccctgcag