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GTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAgtaagatgcagaactggaacatttaagaatttaagaattatagtttggatacttgattgccatgagcaaggatcgaaaaaagaccagaattttcaaaatt...
species | Oryza sativa |
transcript | LOC_Os11g40080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAA GTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCAEST: gi|58689879|gb|CK078566.1|CK078566
genomic: AAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAgtaagatgca ... ataaatgtagGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCA
EST: AAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAA GTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCAEST: gi|29667118|gb|CB663393.1|CB663393
genomic: AAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAgtaagatgca ... ataaatgtagGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTGTTGATTGGTCTCA
EST: AAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAA GTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGTNGT-GATTGGTCTC
genomic: AAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAgtaagatgca ... ataaatgtagGTCTGATGTTCTTGGCCAGTTCATGCCGCTGGTTGGT-GTTGATTGGTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGATGCTCACATATATTTATGGAAATGGAATGCACGCATTGTCATTTCAGATGTTGATGGAACTATCACCAAgtaagatgcagaactggaacatttaagaatttaagaattatagtttggatacttgattgccatgagcaaggatcgaaaaaagaccagaattttcaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa