Sequence
atgc intronic sequence ATGC exonic sequenceGATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttgttactcgctagcacatctaataattcgacaaagttgaaatgtttctggcatccaattccttatctttactttttttgctttagcctataa...
Basic information
species | Oryza sativa |
transcript | LOC_Os11g33240.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G064023_T04 (Zea mays), 5'ss of exon 4
GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttgttactcgctagcacatctaataattcgacaaag-ttgaaatgtttctggcatccaattccttatct-ttactttttttgctttagcctataa----------
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GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAGCAGgt-----ttgctactcg-tagaccttctg------tgacgaaccttgtaaagtcgagggtatctgatgccttatctgctgttcttttggccaatgctagcaaatagtgtcaa
upper sequence: LOC_Os11g33240.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G063851_T02 (Zea mays), 5'ss of exon 4
GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttgttactcgctagcacatctaataattcgacaaagttgaaatgtttctggcatccaattccttatctttactttttttgctttagcctataa------
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GATCTTAAGTCCCAGTTGCAGGAATTGATTCCGGAACAACAGgt-----ttgctgcgcg-tagactatctgtaaatcttgtaaagtcgaaaagttcttggggggtatctgatgcctttatcttctgttcttttagccaatagcagctaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86904765|gb|CI310558.1|CI310558EST: GATTCCCGAGCAACAG GATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
genomic: GATTCCCGAGCAACAGgtatgttttg ... tctggtacagGATCGCTTAAAGAAACTTAAATCAGAACATGGGAAGGTCCAGCTTGGAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCTTAAGTCCCAGCTGCAGGAATTGATTCCCGAGCAACAGgtatgttttgttactcgctagcacatctaataattcgacaaagttgaaatgtttctggcatccaattccttatctttactttttttgctttagcctataa
- - - - - - CAGCTG
- - - - - - AGCTGC
- - - - - - - CTGCAG