1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAACAGCAGCAGCTCCCTTCAAGATGATGATCATGTGCTGGAAAGGCTGCAAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAGgtgagagaccccaattagcaacagcaacaacaacaacaacaatatgatgatcatcatatgcaaaagcacaagcccaatcatgcatccaaaaaagaatctg...
species | Oryza sativa |
transcript | LOC_Os11g32750.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTNCCAAAG GGTGGATGGGAGGACGACEST: gi|38472666|gb|CF956798.1|CF956798
genomic: AAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAGgtgagagacc ... gcatatgcagGGTGGATGGGAGGACGAC
EST: AAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAG GGTGGATGGGAGGACGACGAGAGCATCGGCGAAGCTGCCTGCAGAGAGGCCEST: gi|86847426|gb|CI287005.1|CI287005
genomic: AAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAGgtgagagacc ... gcatatgcagGGTGGATGGGAGGACGACGAGAGCATCGGCGAAGCTGCCTGCAGAGAGGCC
EST: AAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAG GGTGGATGGGAGGACGACGAGAGCATCGGCGAAGCTGCCTGCAGAGAGGCC
genomic: AAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAGgtgagagacc ... gcatatgcagGGTGGATGGGAGGACGACGAGAGCATCGGCGAAGCTGCCTGCAGAGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAGCAGCAGCTCCCTTCAAGATGATGATCATGTGCTGGAAAGGCTGCAAGTGCTCATGATCTCGACGCCGAAGCGAAGCGATCTCATCTTCCCAAAGgtgagagaccccaattagcaacagcaacaacaacaacaacaatatgatgatcatcatatgcaaaagcacaagcccaatcatgcatccaaaaaagaatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa