1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGgtatgtaccatgcttgctcagatactcatgcagattctacttgctgtgttttcctctattatatgtatttcatgggtacaagagtttttgactttttattttgtcctgtgacaaatgatatttttcttcag
species | Oryza sativa |
transcript | LOC_Os11g31700.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGG AAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAAEST: gi|27547113|gb|CA765110.2|CA765110
genomic: TTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGgtatgtacca ... ttttcttcagAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAA
EST: TTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGG AAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAAEST: gi|12404885|gb|AU166486.1|AU166486
genomic: TTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGgtatgtacca ... ttttcttcagAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAA
EST: CAATGGCTACAGGATATCCGAGAGATTGG AAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAAEST: gi|88380040|gb|CI513630.1|CI513630
genomic: CAATGGCTACAGGATATCCGAGAGATTGGgtatgtacca ... ttttcttcagAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAA
EST: GATATCCGAGAGATTGG AAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAAEST: gi|88465097|gb|CI514869.1|CI514869
genomic: GATATCCGAGAGATTGGgtatgtacca ... ttttcttcagAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAA
EST: AATGGCTACAGGATATCCGAGAGATTGG AAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAA
genomic: AATGGCTACAGGATATCCGAGAGATTGGgtatgtacca ... ttttcttcagAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGgtatgtaccatgcttgctcagatactcatgcagattctacttgctgtgttttcctctattatatgtatttcatgggtacaagagtttttgactttttattttgtcctgtgacaaatgatatttttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG