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GATTGCTTCGGTAGGCCCATAGCAAGTGCACCAGATGCTTGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcacttcttcttcttattgttatcattctaggatagagcttgagcttaagacaattgggctgaaaaaattacgtgcagttctgttatctgggcatt...
species | Oryza sativa |
transcript | LOC_Os11g31640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCTEST: gi|29671690|gb|CB667965.1|CB667965
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCT
EST: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCTEST: gi|58690713|gb|CK079400.1|CK079400
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCT
EST: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACEST: gi|29615691|gb|CB620703.1|CB620703
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTAC
EST: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCTEST: gi|29672756|gb|CB669031.1|CB669031
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCT
EST: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCTEST: gi|163928499|gb|EG711384.1|EG711384
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCT
EST: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCTEST: gi|29628851|gb|CB633862.1|CB633862
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCT
EST: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACGAGATGCCTCAACCTAGGATCCTACAATTACCTEST: gi|58653726|gb|CK042406.1|CK042406
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGATGCCTCAACCTAGGATCCTACAATTACCT
EST: TGGTTAGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAA GCGTACTTCAAATACCACAAGAT
genomic: TGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcactt ... attgtttcagGCGTACTTCAAATACCACAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGCTTCGGTAGGCCCATAGCAAGTGCACCAGATGCTTGGTTTGATGTTGTTGAGCGCTACTCCAATGACAGTAACAAGACATTAAAgtaagcacttcttcttcttattgttatcattctaggatagagcttgagcttaagacaattgggctgaaaaaattacgtgcagttctgttatctgggcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat