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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag

Basic information

species Oryza sativa
transcript LOC_Os11g29190.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G078985_T01 (Zea mays), 5'ss of exon 3
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtaca-acacattgtcatggtacatcttgctttttgttcggatgataccaggtta-ttg-acacatctgtgatctaattgtgtttcag
                ||||||||| |||||||||||||| |||||||||||||||||||| || ||| | || || || ||||||||||| ||||||||||| | | |   ||||  | || || | | | ||| ||       | | | || | |||  | |||   ||  | | |  |||  |||
TCACCACTGGTGCCAGGGAGAGCGCTTTCAGGAACATCAAAACCATTGCTGAGTGCCTTGCAGATGAGTTGATCAACGCTGCCAAGGGCTCTTCCAACAGgtatatatatcctgtctggctatatttggttgtttttttcctatctgcgatgtgaattgtgctcattcatgg-caattcttgtcacag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G156673_T03 (Zea mays), 5'ss of exon 2
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctt-tttgt----tcggatgataccaggttattgacacatctgtgatctaattgtgtttcag
                |||||| || ||| |||||||||| |||||||| ||||||||||| || ||||| || || || |||||||||||||||||||||||||  |  ||| |    | | |||||  | | |||     || | |||   |  || ||  | |||  |||  | | |  |||| |||
TCACCACTGGTGCCAGGGAGAGTGCTTTCCGGAACATCAAAACCATTGCCGAGTGCCTTGCAGATGAGCTGATCAACGCTGCCAAGGGCTCATCCAACAGgtaca-tatgttgcctgtttgcttcttgtctatctgtgattccgcacgatgtgaaattgtt--ctcattcgtg-ccaattcttgttacag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA09G15680.2 (Glycine max), 5'ss of exon 3
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaac-----acattg----tcatggtacatcttgctttttgttcggatgataccaggttattgacacatctg-----tgatctaattgtgtttcag
                |||    || ||||| ||||||||||| |||||||| ||| | ||||| || ||||||||||| || || || |||||||||||||| |       |||||     |||||||   |     || |  |     |   |     || |||     | ||     |||  | | ||| ||||||
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCTAAAGGTTCATCCAACAGgtatactttttaacattcctattcatggtgtgtacattttctgatgtaattttgattttttttttgttggttttgctgaatgacattactgtatttcag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA02G26840.1 (Glycine max), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgc-----tttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag------
                |||    || ||||| ||||||||||| |||||||| ||| | || || || ||||||||||| ||||| || |||||||| ||||| |              | ||| |  |     |||||||| |     |   |  || |||     | |||    ||||  | | |||       
TAACAACAGGTGCTCGGGAAGCTGCTTTCAGAAACATCAAGACAATTGCTGAATGCTTGGCCGATGAACTTATTAATGCAGCCAAAGGTTCATCCAATAGgtatacttttgcaatcctattcatttaacatacatttttgtttgtcattttaaatttttttgttggttttgttgaataat-atttctcaatttcag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: AT2G37270.1 (Arabidopsis thaliana), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtac-aacacattgtc---atggtacatcttgctttttgttcggatgataccaggtta-ttgacacatctgtg--atctaattgtgtttcag--
                 ||    ||||| || ||||||||||| || ||||||||||||||||| || || || ||||| || ||||| || |||||||||||  |||||  | ||   || ||   |||     |   |||   | ||     |||| || |   |    |   ||||  |  ||| |     
TTACAACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCGCTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGgtaagaacactctatctacatagtctgtctcttgatggcttcactttattgttagttagttaagctaataatagcatcttctcttgtcttgcag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G11940.2 (Arabidopsis thaliana), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaat-tgtgtttcag
                 ||    || ||||| ||||||||||| || ||||||||||||||||| ||  | || || || ||||||||||| ||||||||||| || ||| |  ||    |   |||   | ||||||  || |    | || |    |  ||   ||| ||  | ||| || |||
TTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGgta-aatacacttccaa---atgacttcactattgttcatataacttaaagtga--agctaatgattgaactgttatgtcttgcag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv04s0043g00440.t01 (Vitis vinifera), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttg-----ctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag-----------------------------------------
                 |||   || ||||||||||||||||| || ||||| ||| | || || || || ||||| || || ||||| |||||||||||||| || | |   |     ||  |||||       | |||  | |||  |  | | || | |  |  |||||   ||| |   || | |                                          
TCACTACTGGTGCTCGCGAGTCTGCATTCAGGAACATCAAGACAATAGCTGAATGCTTGGCCGATGAACTCATTAACGCAGCAAAGGGTTCATCCAACAGgtaaaagatagcttagatatatctcttgaaaaatatattgcactgattctctctgtttttagtgagttctgttccctattctggtcttataatatgttggctgactgtgttatattacatgtatatctcag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: EDP01658 (Chlamydomonas reinhardtii), 5'ss of exon 6
--------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgta-----caacacattgtcatggtacatcttgctttttgtt--cggatgatacc---aggttattgacacatctgt-gatctaattgtgtttcag------
               |||  ||||||| | ||||||||||||||||| |||||||| |||||||||||  | || || ||||||||||| ||||||||||      |  |  | |  || | |       | ||   |    | || |   ||   |||     | ||    ||  |   |  |   |  ||        
ACCACTGGCGCCCGCGAGGCCGCCTTCCGCAACATCAAGACCATTGCGGAGTGCCTGGCTGACGAGCTGGTGAACGCTGCCAAGGGCTCGTCCAACAGGTgggcgcctgcgtactagcacgatgggctaggattggaggcgccagaggccgccgtgaggcgggcggcagtggtgccgggttggtcaggcatccaagaaaa

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S10_385V6.1 (Physcomitrella patens), 5'ss of exon 3
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag-----------------------
                 |||   || ||||||||||||||||||||||| |||||| | ||||||||  | ||||| || || || || || ||||||||||| ||  | |            | |||  |    | |  |||    ||   | ||   | | |||| |      | ||                             
TTACTACTGGTGCGCGAGAGTCTGCTTTCAGGAACATCAAGACCATTGCAGAGTGCTTGGCTGACGAATTAATTAACGCAGCTAAAGGGTCTTCCAACAGgtaaaatgcttgagacaaccttgttttgtctgaattacatatggcgtcattctgttttgatacctgttacacttctctggactgataaaaggttgttgcttgttccag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S101_208V6.1 (Physcomitrella patens), 5'ss of exon 3
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgta---------caacacattgt-------catggtacatcttgctttttgttcggat--gataccaggttattgacacatctgtgatctaattgtgtttcag-----------------------------------------
                 |||  ||||||||||||||||||||| ||||| |||||| | ||||||||| | || ||||| || ||||| || || |||||||          | ||  || ||         |||  ||| || | | ||||    ||  | ||  | | | |||     ||||| || | |||  ||                                              
TGACAACTGGTGCCCGAGAGTCCGCCTTCAGGAACATCAAGACGATTGCGGAGTGCTTGGCTGACGAGTTGATCAATGCTGCGAAGGGTTCTTCTAACAGgtgtgtggtgttcgactgatagtgtgtgcgtgtggagcatttttcgtgttgtcataatcgggtaatacgctcttggtgtttctgttatttgattcagtggtgactttgtcacggaggctaatttggtattgtttgtggtaacag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S400_33V6.1 (Physcomitrella patens), 5'ss of exon 3
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttt---tgttcggatgataccaggttattgacacatctgtgatctaa-ttgtgtttcag------------
                 |||   || || || |||||||||||||||||||||||| | ||||| ||| | ||||| || |||||||| || || ||||||||  |    ||           |    | |||   |||||    ||    |  || ||  |  | |  |  ||| | |||||  | |             
TCACCACTGGCGCACGAGAGTCTGCTTTTAGAAACATCAAGACCATTGCTGAGTGCTTGGCTGATGAGTTGATTAACGCAGCCAAGGGTTCCTCAAACAGgtatgaatagttacgggaaagtcttcgacatttacttgttctttggagcagaaattgttatcctaccctttttctgacttgtgggtaattcttttttacag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ17708 (Selaginella moellendorffii), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacatt--gtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag
                 ||||| || ||| | |||||||||||||| || |||||||||||||||||||| || |||||||||||||| || ||||||||||||  | |     |  ||  | | ||| || |   | ||  |   | ||  ||| ||||    || |                   
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtacctcgcggccagaaattcttcctctcgcctcaagctctaa-agttccttgtttttgatgtttcag-------------------

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ16239 (Selaginella moellendorffii), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag
                 ||||| || ||| | |||||||||||||| || |||||||| ||||||||||| || |||||||||||||| || ||||||||||||    |   | ||  | |  |||| || |    ||      ||  | |||  |      | | || | |  |  ||||||||
TCACTACTGGAGCTCGCGAGAGTGCTTTCCGAAACATCAAGACCATCGCCGAGTGCCTCGCTGACGAGCTCATGAATGCCGCCAAGGGATCTTCCAACAGgtaccttgcg--gcca--gaaattctttctctcgcctcaagctcta--aagttcct----tgtttttgtttt--tgatgtttcag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ37091 (Selaginella moellendorffii), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag
                 ||||| || ||| | |||||||||||||| || |||||||||||||||||||| || ||||| || ||||| || ||||||||||||  |  |    ||| ||   ||| |||  |  || | | || || | |     |   | ||||||  ||  || ||  ||||
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtacttccta----cattgt---tctagctcatgctttgaaagaaactaaga----gctccttctgtg--cttgtt-tgcatcag

upper sequence: LOC_Os11g29190.4 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ18003 (Selaginella moellendorffii), 5'ss of exon 4
----------------GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag
                 ||||| || ||| | |||||||||||||| || |||||||||||||||||||| || ||||| || ||||| || ||||||||||||  |  |    ||| ||   ||| |||  |  || | | || || | |     | | | ||||||  ||  || ||  ||||
TCACCACTGGAGCTCGCGAGAGTGCTTTCCGTAACATCAAGACCATCGCCGAGTGCCTTGCTGACGAGCTGATGAATGCTGCAAAGGGATCGTCCAACAGgtacttccta----cattgt---tctagctcatgctttgaaagaaactaaga----gccccttctgtg--cttgtt-tgcatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88291105|gb|CI527495.1|CI527495
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86528066|gb|CI168272.1|CI168272
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86423685|gb|CI062446.1|CI062446
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|88956587|gb|CI092799.1|CI092799
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|33654903|gb|CF277517.1|CF277517
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86528622|gb|CI168828.1|CI168828
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|3760830|gb|C98084.1|C98084
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCCCCAAGGGCCCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|55436354|gb|CV731314.1|CV731314
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86423496|gb|CI062257.1|CI062257
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|33660091|gb|CF291058.1|CF291058
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGGTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|88480307|gb|CI417578.1|CI417578
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTACCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86419609|gb|CI054410.1|CI054410
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86530131|gb|CI170337.1|CI170337
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|15849051|gb|BI797327.1|BI797327
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCC-ACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86423125|gb|CI060698.1|CI060698
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|88238044|gb|CI237893.1|CI237893
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86524975|gb|CI165181.1|CI165181
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|88906788|gb|CI375860.1|CI375860
EST:     CCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCC
genomic: CCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|33685838|gb|CF314077.1|CF314077
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86422261|gb|CI059834.1|CI059834
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|218491738|gb|FG944872.1|FG944872
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|88295124|gb|CI525277.1|CI525277
EST:     GGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|86855104|gb|CI263171.1|CI263171
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|5455341|gb|AU075584.1|AU075584
EST:     AGTGCCTTGCTGACGAGCTTATTAATGCCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: AGTGCCTTGCTGACGAGCTTATTAATG-CCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|427759|gb|D23895.1|D23895
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|88237258|gb|CI237107.1|CI237107
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|88384894|gb|CI559162.1|CI559162
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
EST: gi|33663741|gb|CF294708.1|CF294708
EST:     GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAG                         CTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG
genomic: GAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 97

GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacaca ... tgtgtttcagCTATGCCATCAAGAAGAAGGATGAGATCGAGCGTGTTGCCAAGGCCAACCGTTGAGTGGTGATCCCATGTCATTGTGCTAAAGCTCTTGCGCTGTTTGGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGAGCGCCTTCAGGAACATCAAGACCATTGCTGAGTGCCTTGCTGACGAGCTTATTAATGCCGCCAAGGGCTCATCCAACAGgtacaacacattgtcatggtacatcttgctttttgttcggatgataccaggttattgacacatctgtgatctaattgtgtttcag

- - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT