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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTTGTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatctactacgccatttagtctgaaatgtgcaattctacttgtgtgagaggcattggttgggcagtcttataggataaagctgcttaatatttaag...

Basic information

species Oryza sativa
transcript LOC_Os11g28340.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g28340.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G031802_T01 (Zea mays), 5'ss of exon 1
CCATATATTTAGAAGCTGTAGCAATTCTACCTCAACTTGTGTTGCTACAGCGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaaga--tctac-tacgccatttagtctgaaatgtgcaattctacttgtgtgagaggcattggttgggcagtcttataggataaagctgcttaatatttaag
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CCATTTATTTGGAAGCTGTCGCGATATTTCCACAACTTGTGTTGCTACAGCGGACAAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTCTTGGGgtaagagatctatatatggcagt-atctaaaaatgcataaaaa-acgaaaacaaatgtaattttcttagaaacaatgcattgaacaaaagttttgtatgaac-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117216901|gb|CT861591.1|CT861591
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|88849104|gb|CI087626.1|CI087626
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|86542052|gb|CI182258.1|CI182258
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|86529172|gb|CI169378.1|CI169378
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|86886118|gb|CI321154.1|CI321154
EST:     CTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|27546640|gb|CA764760.2|CA764760
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|58599124|gb|CK009652.1|CK009652
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTG
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTG
EST: gi|88262756|gb|CI366530.1|CI366530
EST:     AATATGTCTTCTTTCTAGGG                         TGCATACCGTGTGCGGTATATCCTTAACTGGATCTACCGATACTTCACTG
genomic: AATATGTCTTCTTTCTA-GGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTG
EST: gi|88241404|gb|CI241253.1|CI241253
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|33684131|gb|CF312370.1|CF312370
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|86545642|gb|CI185848.1|CI185848
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
EST: gi|89187774|gb|CI009758.1|CI009758
EST:     CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGG                         TGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA
genomic: CGCACGAGGAATATTGACAACCTGACTGGCCAATATGTCTTCTTTCTAGGgtaagatcta ... gatgatgcagTGCATACCGTGTGCTGTATATCCTTAACTGGATCTACCGATACTTCACTGA