1 5' 3' | 2 5' 3' | 3 5' 3' |
CATGCCAGAAATTCCTGATATAGCAAAGTGTTCTCCTGATTTGTGTGCATCAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTGgtaagctatattgtacaagttatgtaattacatacattaacattgtaatttcaaatatgcaaccatgcctaaccatatattatttttttataataaaaat...
species | Oryza sativa |
transcript | LOC_Os11g18830.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTG GCATTTTCAGAGCTTGACAGCTCAGATGGACCCATCGGTTTCTGGTGGAACEST: gi|32948411|gb|BP184983.1|BP184983
genomic: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTGgtaagctata ... gtttcttcagGCATTTTCAGAGCTTGACAGCTCAGATGGACC-ATCGGTTTCTGGTGGAAC
EST: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTG GCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACAEST: gi|218487907|gb|FG966823.1|FG966823
genomic: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTGgtaagctata ... gtttcttcagGCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACA
EST: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTG GCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACAEST: gi|27920768|gb|CB096576.1|CB096576
genomic: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTGgtaagctata ... gtttcttcagGCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACA
EST: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTG GCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACAEST: gi|58688027|gb|CK076714.1|CK076714
genomic: CAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTGgtaagctata ... gtttcttcagGCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACA
EST: TGAGACAAGACTG GCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACA
genomic: TGAGACAAGACTGgtaagctata ... gtttcttcagGCATTTTCAGAGCTTGACAGCTCAGATGGACCATCGGTTTCTGGTGGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCCAGAAATTCCTGATATAGCAAAGTGTTCTCCTGATTTGTGTGCATCAAAGCCCTGGGAAGATACATTTATTACTTATTTCTCTGAGACAAGACTGgtaagctatattgtacaagttatgtaattacatacattaacattgtaatttcaaatatgcaaccatgcctaaccatatattatttttttataataaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa