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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATTGATGTATCGAATGAAACAAAAACAAATACGCCTTTGGAATATCAGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAGgttgtttcatcctcaacattctcactatgtgctttcatcctctcttatctgtcgtgtggtctgtttttctttgtgtgctttagtcattcagacatgaaca...

Basic information

species Oryza sativa
transcript LOC_Os11g16290.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88691534|gb|CI733612.1|CI733612
EST:     AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAG                         TTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA
genomic: AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAGgttgtttcat ... tcttttgaagTTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA
EST: gi|88688917|gb|CI732493.1|CI732493
EST:     AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAG                         TTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA
genomic: AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAGgttgtttcat ... tcttttgaagTTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA
EST: gi|58687769|gb|CK076456.1|CK076456
EST:     AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAG                         TTAATAAAGTGTAGCAATGCATCCGATGGAGAGAAAAGACGCAGCTCAACA
genomic: AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAGgttgtttcat ... tcttttgaagTTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA
EST: gi|88688760|gb|CI732336.1|CI732336
EST:     AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAG                         TTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA
genomic: AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAGgttgtttcat ... tcttttgaagTTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA
EST: gi|58610755|gb|CK038467.1|CK038467
EST:     AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAAGAAG                         TTAATAAAGTGTAGCAATGCATCCGATGGAGAGAAAAGACGCAGCTCAACA
genomic: AGATAGAGGGCATTGATGAACAACTATCAGATACAAAAAGTACTAACAAGgttgtttcat ... tcttttgaagTTAATAAAGTGTAGCAATGCATCCGACGGAGAGAAAAGACGCAGCTCAACA