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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGAGACCAAGGAGAACAAAGGATTCGCATTCGTCAACTTCACCGCGAAGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAGgtattaccttgtagctctgttggtcgccatagaggaggctttgttctatcacgtatgatgtgcttacattggatggtttggtctttggtgcag

Basic information

species Oryza sativa
transcript LOC_Os11g14430.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29639969|gb|CB644978.1|CB644978
EST:     AGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAG                         GGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTCGTT
genomic: AGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAGgtattacctt ... tttggtgcagGGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTCGTT
EST: gi|29664577|gb|CB660852.1|CB660852
EST:     AGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAG                         GGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTCGTT
genomic: AGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAGgtattacctt ... tttggtgcagGGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTCGTT
EST: gi|58693279|gb|CK081966.1|CK081966
EST:     AGG-AGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAG                         GGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTTGTT
genomic: AGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAGgtattacctt ... tttggtgcagGGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTCGTT
EST: gi|29640012|gb|CB645021.1|CB645021
EST:     AGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAG                         GGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTCGTT
genomic: AGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAGgtattacctt ... tttggtgcagGGGAGGACACTGCGGTGCTCACTGTCGCAGGCAAAGCACAGGCTATTCGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAAGAGACCAAGGAGAACAAAGGATTCGCATTCGTCAACTTCACCGCGAAGGAAGCGGCTCAGCGTGCTATCGAGGAACTGCATGACAAAGAACACAAGgtattaccttgtagctctgttggtcgccatagaggaggctttgttctatcacgtatgatgtgcttacattggatggtttggtctttggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC