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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACTAAATTCAGATGGATCACTAAGAGATGCAGAGACTATGTTAGATCAGTTGAGTTTGCTTGGGAAAAAGATTACACCTTCACTCGTAAATGATCTGgtgagttactgctcagattattggctatcttttgaattatcatttctgctattttatttgaagttgtgcttgcttctttaaggatttcgtcgcgatttgc...

Basic information

species Oryza sativa
transcript LOC_Os11g13990.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g13990.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G136665_T01 (Zea mays), 5'ss of exon 3
AGCACTAAATTCAGATGGATCACTAAGAGATGCAGAGACTATGTTAGATCAGTTGAGTTTGCTTGGGAAAAAGATTACACCTTCACTCGTAAATGATCTGgtgagttactgctcagattattggctatcttttgaattatca----tttctgctattttatttgaagttgtgcttgcttctttaaggatttcgtcgcgatttgc
|||||||||||||||||||||| | |||||||| ||||| ||||||||||||||| |||| || ||||| ||||| ||||| ||||| |||||||||||||| ||| | |  ||||||| |||| ||| |||  || ||  |    | |||  | | || ||| ||  | |  ||     |||| ||| ||   |  |  |   
AGCACTAAATTCAGATGGATCATTGAGAGATGCGGAGACAATGTTAGATCAGTTGTGTTTACTAGGGAAGAAGATAACACCATCACTTGTAAATGATCTGgtaagtaatttttcagattgttggatatttttgtaactaaaaaaaatctctattctattgtttcaatgtattattaggagttta-ggacttgcacatgtct---

upper sequence: LOC_Os11g13990.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv12s0035g01960.t01 (Vitis vinifera), 5'ss of exon 1
AGCACTAAATTCAGATGGATCACTAAGAGATGCAGAGACTATGTTAGATCAGTTGAGTTTGCTTGGGAAAAAGATTACACCTTCACTCGTAAATGATCTGgtgagttactgctcagattattg-gctatcttttgaattatcatttctgctatttta---tttgaagttgtgcttgcttctt--taaggatttcgtcgcgatttgc
 ||  ||||| | ||||| || ||  |||||||||| ||||||||||| || ||||||||||| ||||| |  || ||  | || || |||||||| || |||||||   |  ||   |     |  |   | ||  | |   |||   | |||||    ||||   ||     || ||| |  ||  | |       |       
TGCCTTAAATGCTGATGGTTCCCTTCGAGATGCAGAAACTATGTTAGACCAATTGAGTTTGCTGGGGAAGAGAATCACTACGTCTCTTGTAAATGACCTTgtgagtttgcgaccatgcttccatgacacagtctggttcaatttttaaaccatttttatttttgtgattaattctgtttcctgctagagctccaaataca------