Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGGTGGCCAAATGTGTGCAATTAAAGAGGTCAAGGTTATTTCTGATGATTCTAACTCGAAAGAGTGTCTCAGGCAGCTACATCAGgtaatattcatcttgtcaacaaatagcatctgtcagcagatatttaaactttacatctttcgtactaatactacttcctatgggcag
Basic information
species | Oryza sativa |
transcript | LOC_Os11g10100.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os11g10100.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA05G32510.1 (Glycine max), 5'ss of exon 3
TGAAGGTGGCCAAATGTGTGCAATTAAAGAGGTCAAGGTTATTTCTGATGATTCTAACTCGAAAGAGTGTCTCAGGCAGCTACATCAGgtaatattcatcttgtcaacaaatagc-atctgtcag---cagatatttaaactttacatctttcgtactaatactacttcctatgggcag-------------------------------------------------------------------
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TGAAAATGGACAAATGTGTGCAATAAAAGAGGTCAAGGTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAACCAGgtcattctgacatttcctaagaagatttatacatgatgctccaacacatagtacttttgcagctcttctttgtgctgttgcattggagtttgctttaatatgtccaattatgattttatagtccataatgttataacatattctctatttgattacag
upper sequence: LOC_Os11g10100.2 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G53570.3 (Arabidopsis thaliana), 5'ss of exon 3
TGAAGGTGGCCAAATGTGTGCAATTAAAGAGGTCAAGGTTATTTCTGATGATTCTAACTCGAAAGAGTGTCTCAGGCAGCTACATCAGgtaatattcatcttgtcaacaaatagcatctgtcagcagatatttaaactttacatctttcgtactaat-actacttcctatgggcag
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TGAGAAAGGGAAAATGTGTGCTATTAAAGAGGTCAAGGTCATTTCTGACGATCAAACATCAAAAGAATGTCTGAAGCAACTAAATCAGgta-tatctaattcgcct--------catct-tttgtgtatgtcagaa--ttaaaacgaaagtatgaaccactctattttatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29680776|gb|CB677051.1|CB677051EST: TTATTTCTGATGATTCTAACTCGAAAGAGTGTCTCAGGCAGCTACATCAG GAAATTGTGCTTCTGAGTCAGTTGTCACATCCAAATATTGTGCAGTACTAT
genomic: TTATTTCTGATGATTCTAACTCGAAAGAGTGTCTCAGGCAGCTACATCAGgtaatattca ... ctatgggcagGAAATTGTGCTTCTGAGTCAGTTGTCACATCCAAATATTGTGCAGTACTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGGTGGCCAAATGTGTGCAATTAAAGAGGTCAAGGTTATTTCTGATGATTCTAACTCGAAAGAGTGTCTCAGGCAGCTACATCAGgtaatattcatcttgtcaacaaatagcatctgtcagcagatatttaaactttacatctttcgtactaatactacttcctatgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT