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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGGCCACGAGATGGAACTATGCAGTGTTTCATTAGGAGGGATAAGTCTACGCAGACCTACTATTTGTACCTCTCTCTTGGCTCTGgtatgttacttgttacatctcatatgctttatgttgtatgcgcctatgtaccagagcccatatttgcttctgcataagaagattcatatgtagttgtata...

Basic information

species Oryza sativa
transcript LOC_Os11g06420.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g06420.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G046816_T04 (Zea mays), 5'ss of exon 3
CCTGGGCCACGAGATGGAACTATGCAGTGTTTCATTAGGAGGGATAAGTCTACGCAGACCTACTATTTGTACCTCTCTCTTGGCTCTGgtatgttacttgttacatctcatat-gctttatgttgtatgcgcctatgtaccagagcccatatttgcttctgcataagaagattcatatgtagttgtata
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CCTGGGCCTCGAGATGGAACTATTCAGTGTTTTATTAAGAGGGATACATCTACCCAAATCTACAGTCTGTACCTTAGTTTTAGCTCTGgtaagtctattgttgtgtggactattggaattttcggtaaaagtctg-gcatctgtgtttagattcagaacttaaaaactctgtagaaagaatgcgagata