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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcag

Basic information

species Oryza sativa
transcript LOC_Os11g06390.6
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggt------------tgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcag
|||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||  ||||||||             | ||   ||  |||  |   ||  ||| | |||   || || || | || |||
GAGAAGATGACCCAAATCATGTTTGAGACTTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGACGTACAACTGgtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcattcag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggt-------------tgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcag
|||||||||||||| |||||||||||||| |||||||| || || |||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||| | ||  | |||||||             |  || ||   |||  | | ||  | | | ||| | || || || |   |   
GAGAAGATGACCCAAATCATGTTTGAGACCTTCAATGTTCCTGCCATGTATGTCGCCATCCAGGCTGTGCTTTCCCTGTACGCCAGTGGGCGTACAACTGgtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcag---

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttt--taaaaaatattcac-----tttattcatgaactgt-tgctcttgatgcag
|| || |||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||||||| ||||| ||||| || |||||||||    ||| | |  |||   |   | ||   |      | |||||     | ||| | ||||     |  | ||||  |||
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatatt-cactttattcatgaactgttgctc---ttgatgcag-----------------------
|||||||||||||| || ||||||||||||||||||||||| || |||||||| || || ||||| ||  | || ||||||||||||||| | || || |||  |   ||  | |      |  || ||   ||   || |  ||| |  |||||   | |   |    |||   |||                       
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGAAGAACTACAGgtt-tgtttctgtgattgatcttggatttaccaattttactatactgtggtcatgtgatttcaattggattgggccagttatttgaataaatgctgtatgt

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgta-----ataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactg-ttgctcttgatgcag
|| ||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||||| ||||||||||||| || |||||||||      || ||   ||  | || || |   ||||| ||     ||| | | | | ||||    || || |  |  |||
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCCAGTGGTCGCACAACTGgtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatcaattcctttcaaaacag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA15G05570.1 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcag----------------------------------
|||||||||||||| || ||||||||||||||||||||||| || |||||||| || || ||||| ||  | || |||||||||||||||||||| || |||      |   |    || ||||   ||  |   | |||| ||| ||  | || ||   || | |  ||                                      
GAGAAGATGACCCAAATTATGTTTGAGACTTTCAATGTGCCTGCCATGTATGTTGCAATTCAGGCTGTCTTGTCTCTGTATGCCAGTGGACGTACTACAGgt------ttgtttctgtgattgatc-ttggatttactatttactatac-cgtggacatgtgatttcaattggattaggtcagcttattatctgagcaaattcctgta

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA08G15480.1 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgta-----ataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactg-ttgctcttgatgcag
|| ||||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||||| ||||||| ||||| || |||||||||      || ||   ||  | || || |   ||||| ||     |   | | | | ||||    || || || |  |||
GAAAAGATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTTCTCTCCTTGTATGCAAGTGGTCGCACAACTGgtttgtatatcaccatctgtcttgattcattcttttataatcacattgttctttccctgaatcaattccttttaaaacag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacat-------ggttgagagttttaaaaaatattcactttattcatgaactg--ttgctcttgatgcag
|| || |||||||| |||||||||||||| ||||||||||| || |||||||| |||||||| || || |||||||| ||||| ||||| || |||||||||    | |      |||         || | ||||||   |     |   | | | | ||||     |   |  |||  |||
GAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAAGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtatttgtatccatctgtttcaattcatagttttgtcatcacattgttctttccctgaatcaaatactttctgaaacag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatattcactttat-tcatgaactgttgc----tcttgat-gcag------------------
||||||||||| ||||||||||||||||| || |||   |||||||||||||| ||||| || || || || || || || |||||||| |||||||| |||  ||  ||| |   |  || ||||   | || |||  ||   ||| | |  | ||   ||      | |||||  |||                  
GAGAAGATGACTCAGATCATGTTTGAGACCTTTAATTCTCCAGCTATGTATGTTGCCATTCAAGCTGTTCTATCACTTTACGCCAGTGGTCGTACAACCGgt--tagttcattattaatgtcgagaaaatgaacaaagttttgttttctgtttttaatgattatgtcatattgatcacagtgaaatgattttctttag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaa-----taactc-actcacatggttgagagttttaaaaaatattcactt-tattca--tgaactgttgctcttgatgcag---
||||||||||| ||||||||||||||||| |||||||| || || |||||||| ||||| |||||||| || || || ||||||||||| |||||||| ||| |     |||||| |  ||      |  ||||| ||  |  |  | |||| |||| |  | || |  | |||||  || |    
GAGAAGATGACTCAGATCATGTTTGAGACATTCAATGTCCCTGCCATGTATGTTGCCATTCAGGCCGTTCTTTCTCTCTATGCCAGTGGTCGTACAACCGgttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataac---tcactcacatggttgagagtt-ttaaaaaatattcactttattcatgaactgttgctcttgatgcag
||||||||||| || |||||||||||||| || ||    || |||||||||||||||||||| || || |||||| |||| |||||||| |||||||| ||| |  ||   | |  |   | ||| | | |  || |  | ||||     |   |    | | |    | |    |||
GAGAAGATGACTCAAATCATGTTTGAGACCTTTAACTCTCCCGCTATGTATGTCGCCATCCAAGCTGTTCTCTCCTTGTACGCCAGTGGTCGTACAACCGgttagtacattttaggctttttgtttatactcattgatcattatttgaactgagctctgattatcttccattgaacag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 4
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactca--ctcacatggttgagagttttaaaaaatattcact-ttattcatgaactgttgctcttgatgcag------------
|| |||||||| || ||||||||||||||||| |||||||| || |||||||| ||||| ||||| || || || || ||||||||||| ||||||||||||    | | |        ||| |  || |||| |    | ||  || || ||  || |   |   |  | |                 
GAAAAGATGACTCAAATCATGTTTGAGACTTTTAATGTGCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCTCTATATGCCAGTGGGCGTACAACTGgttcgtattaaaatctttttggattggaattttcatttttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgt----aataactcact-cacatggttgag---agttttaaaaaatattcactt-tattcatgaactgttgctcttgatgcag-----------------
||||| ||||||||||| ||||||||||| ||||| || || || |||||||| || ||||| || ||||| || |||||||||||||| |||||||| |||       ||  |||| ||  | || ||    |  |  || |  | ||    | | |   ||     ||| || |  |                     
GAGAAAATGACCCAGATTATGTTTGAGACCTTCAACGTACCTGCCATGTATGTTGCTATCCAAGCTGTGCTGTCTCTGTATGCCAGTGGTCGTACAACAGgtttgtgtcaaagcactgcaagttgtagaagcaaaatacaagacctttttgtgtgtgtgtgtgtgtcattgttcatattattcttgaaccgttagccatt

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S372_48V6.1 (Physcomitrella patens), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactgttgct--cttgatgcag-----------------------
||||||||||| ||||||||||| ||||| ||||| ||||| || ||||| || || |||||||| ||||| || ||||| || || || || || || ||| |      | | |  ||||   | | |    |   |  |      ||         |  | |   |     |||                       
GAGAAGATGACGCAGATCATGTTCGAGACGTTCAACGTGCCGGCGATGTACGTGGCGATCCAGGCGGTGCTGTCGCTGTACGCGAGCGGGCGAACGACGGgtgagtggggagtga-gtggtgagggggtggggatggtggtggtaggatgtggaggtgggaggtgattgagaacagatgtggcggtgcgtggaatgcag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S337_21V6.2 (Physcomitrella patens), 5'ss of exon 4
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcag------------------------------------------------------------------------------------
||||||||||| ||||||||||| ||||| ||||| ||||| || ||||| || ||||| ||||| ||||| || || |||||||||||||| || || ||| |    |     | | || ||||     |  |  || | |  |   | |   |   || |   |   || ||                                                                                    
GAGAAGATGACGCAGATCATGTTCGAGACGTTCAACGTGCCGGCGATGTACGTGGCCATTCAGGCAGTGCTGTCACTATATGCCAGTGGACGAACGACCGgtgagtgatgggaga-aggggtgaggtgaatgcagcatgtgcgttggttgcgaaagtggtggaggtgtgtggagaggtggggtgtttgacatgggaaggtttgtgggtcggggtaagaaactgagagcagttgtggtgatgaatgcaatgcaatgcag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ17401 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatat------tcactttattcatgaactgttgctcttgatgcag----------------------------------------------------------------------
||||||||||||||||||||||| ||||| |||||||| || || ||||| || || ||||| || || || || || || || |||||||| || || ||||   | |   |       |||   ||| || | || ||      |   | | |   |     ||||||   |||  |                                                                       
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCGATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagtttttttatcccttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttgtttttccctctaacacgttgtatgatcgtggtttgtgatcag

upper sequence: LOC_Os11g06390.6 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ35077 (Selaginella moellendorffii), 5'ss of exon 2
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgta-ataactcactcacatggttgagagttttaaaaaatat------tcactttattcatgaactgttgctcttgatgcag-----------------------------------------------------------------------
||||||||||||||||||||||| ||||| |||||||| || || ||||| || || ||||| || || || || || || || |||||||| || || ||||   |  |   |       |||   ||| || | || ||      |   | | |   |     ||||||   |||  |                                                                        
GAGAAGATGACCCAGATCATGTTCGAGACCTTCAATGTCCCGGCCATGTACGTGGCAATCCAAGCAGTCCTTTCACTCTACGCGAGTGGACGCACTACCGgtatggagttttttttttcctttgcttgttctagacaagatggttgatgcgtgtttcttttcttcgttgcttgcgatagacatgatgcttcaagttggttctacttttttttcttctctctaacacgttgtatgatcgtggtttgtgatcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58681727|gb|CK070414.1|CK070414
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58669469|gb|CK058155.1|CK058155
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58588805|gb|CF987113.1|CF987113
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58669699|gb|CK058385.1|CK058385
EST:     GCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: GCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|571650|gb|D41161.1|D41161
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|218499505|gb|FG965148.1|FG965148
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58662532|gb|CK051218.1|CK051218
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58659094|gb|CK047774.1|CK047774
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58595088|gb|CF993396.1|CF993396
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|218491871|gb|FG949270.1|FG949270
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|88243983|gb|CI243105.1|CI243105
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|29643809|gb|CB648816.1|CB648816
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|29664052|gb|CB660327.1|CB660327
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58695120|gb|CK083807.1|CK083807
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGT
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGT
EST: gi|58675135|gb|CK063822.1|CK063822
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58659485|gb|CK048165.1|CK048165
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58682961|gb|CK071648.1|CK071648
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|218488648|gb|FG967105.1|FG967105
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|112786622|gb|EE591117.1|EE591117
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|58677238|gb|CK065925.1|CK065925
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|571969|gb|D41480.1|D41480
EST:     TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG
EST: gi|218503674|gb|FG959464.1|FG959464
EST:     TGTCGCCATTCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTG                         GTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCTATCTATG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactc ... cttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGAAGATGACCCAGATCATGTTTGAGACTTTCAATGTGCCAGCTATGTATGTCGCCATCCAGGCCGTGCTCTCCCTGTATGCCAGTGGACGTACAACTGgtaataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactgttgctcttgatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA