1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGTTCCACCGCTAGATTTAGGTGAACTCCTGGCATATTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtttgactttatttttttattgcattctagatcttcagagattttatattttgaagtttgagactatgttgagctgatttttctttgtcatatgctatag
species | Oryza sativa |
transcript | LOC_Os11g05990.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAG ACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACCEST: gi|29618609|gb|CB623621.1|CB623621
genomic: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtt ... tatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
EST: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAG ACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACCEST: gi|58691143|gb|CK079830.1|CK079830
genomic: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtt ... tatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
EST: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAG ACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACCEST: gi|29632312|gb|CB637321.1|CB637321
genomic: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtt ... tatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
EST: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAG ACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACCEST: gi|29616236|gb|CB621248.1|CB621248
genomic: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtt ... tatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
EST: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAG ACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACCEST: gi|58664502|gb|CK053188.1|CK053188
genomic: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtt ... tatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
EST: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAG ACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACCEST: gi|29640788|gb|CB645795.1|CB645795
genomic: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtt ... tatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
EST: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAG ACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
genomic: TTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtt ... tatgctatagACGTGTGCGATAAGCTGGTGGAATCTCTGTGCAGCAAACGCAAGGACCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTTCCACCGCTAGATTTAGGTGAACTCCTGGCATATTTCCTAAAGCAATCTGGGCCATTGTTTGACCAACTTGGTATAAAAAGAGgtatgaagtttgactttatttttttattgcattctagatcttcagagattttatattttgaagtttgagactatgttgagctgatttttctttgtcatatgctatag
- - - - - - - - - - - - - - - - - - - - - - AAGCAA