1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCACTATAGAGCTTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGgtgaaaataatgatacttcattttatccctagttcttctacactgcatgcatgccttctatagatgatacacatcaaatagcttactcttatgccattct...
species | Oryza sativa |
transcript | LOC_Os11g05090.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAG AGAAAAAACAAATGTCTGGTTTAGGCATTGGTGTTGGTAACATGAGAAGTGEST: gi|27546946|gb|CA765208.2|CA765208
genomic: CGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGgtgaaaataa ... ttaccgacagAGAAAAAACAAATGTCTGGTTTAGGCATTGGTGTTGGTAACATGAGAAGTG
EST: GAACT-GTAATTGGAAAAG AGAAAAAACAAATGTCTGGTTTAGGCATTGGTGTTGGTAACATGAGAAGTG
genomic: GAACTAGTAATTGGAAAAGgtgaaaataa ... ttaccgacagAGAAAAAACAAATGTCTGGTTTAGGCATTGGTGTTGGTAACATGAGAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACTATAGAGCTTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGgtgaaaataatgatacttcattttatccctagttcttctacactgcatgcatgccttctatagatgatacacatcaaatagcttactcttatgccattct
- - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC