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ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacatttctgaaaaataattagtcactgagtaacaaaattcacgaacacttctttcacaactacgtcaaaaatccactaatgtttacatgatgag...
species | Oryza sativa |
transcript | LOC_Os11g04030.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|29674310|gb|CB670585.1|CB670585
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|29644401|gb|CB649408.1|CB649408
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|33677870|gb|CF306109.1|CF306109
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|88334950|gb|CI648725.1|CI648725
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|88330064|gb|CI652455.1|CI652455
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|33677492|gb|CF305731.1|CF305731
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|88347612|gb|CI634297.1|CI634297
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|29682083|gb|CB678358.1|CB678358
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|29679865|gb|CB676140.1|CB676140
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|88332574|gb|CI651734.1|CI651734
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|88353644|gb|CI633035.1|CI633035
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|33678908|gb|CF307147.1|CF307147
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|29678070|gb|CB674345.1|CB674345
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGGEST: gi|88303400|gb|CI669048.1|CI669048
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
EST: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTG GCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
genomic: GCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacat ... tctgctgcagGCGCATCATATATGATCGGTCGAGGTTTTGCATCAATCTTGTGGGGTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCTGGATTTCTTGgtattaacatttctgaaaaataattagtcactgagtaacaaaattcacgaacacttctttcacaactacgtcaaaaatccactaatgtttacatgatgag
- - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa