Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaatgatgcagcaatcagtatagtcatcagccttaaattcaatgtgcagttccagtactatttgtttccatagtgtttttaggcatc...

Basic information

species Oryza sativa
transcript LOC_Os11g03910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G005834_T01 (Zea mays), 5'ss of exon 3
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaa----tgatgcagcaatcagtatagtcatcagccttaaattcaatgtgcagttccagtactatttgtttccatagtgtttttaggcatc--
 |||||||| || || |||||||| || |||||||||||||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||||||||||||| | | | |      |||||| |  || | |     |     |     |||   |  || |||||  |  |    |   | ||      |     ||  
GAGGTACCGTCCGCCACGATCCTCGCACTGCTCCATCTGCAACAACTGCGTCCACAAGTTTGACCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaccgacccagctactatgcagtacgcaatttgaatgttgaatt----atcagattctagctccagacc--tccactgaaaaaggacacgtgcaagtcag

upper sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G56930.2 (Arabidopsis thaliana), 5'ss of exon 3
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaatgatgca-gcaatcagtat--agtcatcagccttaaattcaat---gtgcagttccagt---actatttgtt-tccatagtgttttta--ggcatc----------------------------------------------------------------------
    ||||| |||||  || | || ||||| ||||| ||||||||||| ||  | |  |||||||| |||||||| ||||| ||||||||||||||| | ||||||  ||  || ||||  |  || ||   |     ||  |  |  || || |   |    | |  || |||    | ||   ||| | | |  ||||  ||    ||||                                                                      
GCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGgtaagtttac--tccatgactcttgccatatattcccggttctatgttttgaacttgtttggattcttttgcagcgaaattaccggttcttcttcatgttcatatcaacatcaaccactctgtgcatatatgtgtttgccttttcttggttgaacatatttcaaagacatatggatgaaaag

upper sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT3G56930.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaatgatgcagcaatcagtatagtcatcagccttaaattcaatgtgcagttccagtactatttgtttccatagtgtttttaggcatc
    ||||| |||||  || | || ||||| ||||| ||||||||||| ||  | |  |||||||| |||||||| ||||| ||||||||||||||| | ||||||  ||  || ||||  |           | | |||          ||| ||||   |  |  ||  |   |  ||    ||              
GCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGgtaagtttac--tccatgactc-----------ttgccatatattcccggttctatgttttgaacttgt-ttggattcttttgcag--------------

upper sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
lower sequence: AT5G05070.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaatgatgcagcaatcagtatagtcatcagccttaaattcaatgtgcagttccagtactatttgtttccatagtgtttttaggcatc
    || || ||||| ||| | |||||||||||||||||||||||||| ||  ||   ||||||||||| || |||||||| || ||||||||||  |  |||| |     ||||    | |    |||| ||||   |  |  |  |   |   |  | ||    | |  |  ||| |   | | | | |  ||     
GCTCTATCGTCCACCTCGAGCATCACATTGCTCCATCTGCAACAACTGTGTCCAACGCTTTGATCACCATTGTCCATGGGTTGGTCAGTGCATTGCCCGAgtaaattcttcatcaccacttct-tgatca-tatatataatatacccactctttgttcgaagagtgattgattcttggtgtgaaact-tatgcag-----

upper sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0040g00370.t01 (Vitis vinifera), 5'ss of exon 3
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagta------aacaatcaatgatgcagcaatcagtatag---tcatcagccttaaat-tcaatgtgcagttccagtactatttgt--ttcca---------tagtgt-ttttaggcatc------------------------------------------------------------------
 |  || || || || ||  | || || ||||| |||||||||||||| ||  | ||||||||||||||||| || ||||| |||||||| ||||  || |||||        |  || |  ||    |   || | |  ||   |||| |  |     | |  || |    ||    |  | ||| |  | |||         | || | |||||  || |                                                                  
GATATATCGTCCTCCCCGTGCTTCTCACTGCTCAATCTGCAACAACTGTGTGCAGAAGTTTGATCACCACTGTCCTTGGGTTGGCCAGTGTATTGCTCTGgtaagcttttcccacaaagctttgtcctaaacattaatggagctttcattaatcccccgtatttatataagattttcatgttgtttatgataccaaatcaaggctggtttcttttaatcacccttttttctgatctaaacatttaggtatattcaataaatgactttgtttcttgcttttggttgcag

upper sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaatgatgcagcaatcagtatagtcatcagccttaaattcaatgtgcagttcca-gtactatttgtttccatagtgtt----tttag-gcatc----
    || || || || ||    || || ||||| |||||||||||||| ||| | |  |||||||| ||||| |||||||| || || ||||||||| | ||||||      |   |  |       |  |||  ||| | |  |||| ||    |||| |  | || ||||| | | |   | ||||       | |||   |||    
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagt------ttttttttttttttttttgtac-gtc-ttaatcttatatgtg-tgtgtatgtgcatgtact-tgtatccacctagtacccaaatctagtatatctgat