1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCAACTGCCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaattccacaatgatatacatcatatcatacaatttttttaactcaaaaccatttcttgctttgattcttaataaatttttattcttaataat...
species | Oryza sativa |
transcript | LOC_Os11g03230.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGGACTCAGACTTATTGGAGATGAACAGGCGAACCAGATTCTTGAAGCG CTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCEST: gi|38479989|gb|CF964078.1|CF964078
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaa ... caatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGC
EST: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAGATTCTTGAAGCG CTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAAEST: gi|4715905|gb|AU057021.1|AU057021
genomic: CCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaa ... caatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAA
EST: CGGNACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCG CTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAA
genomic: CGG-ACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaa ... caatttgcagCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACTGCCGGACTCAGACTTATTGGAGATGAAAAGGCGAACCAAATTCTTGAAGCGgtacgtgcaattccacaatgatatacatcatatcatacaatttttttaactcaaaaccatttcttgctttgattcttaataaatttttattcttaataat
- - - - - - - - - - - TTGGAG
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC