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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAAGGACAGAAGGACATCGCCCAAGAGGGGTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGGGTCTTGTTCGTGGGATTACCAGgttaaaatggatatttgccattccaagtatagttcttgtacgcagccgcttgtagcatccttattgattctgttttctgtttattgtccttaaaacag

Basic information

species Oryza sativa
transcript LOC_Os10g42970.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42970.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G101053_T03 (Zea mays), 5'ss of exon 4
CAGAAGGACAGAAGGACATCGCCCAAGAGGGGTTCAATGTTGGGTTTGGGCAATCTGTGCATGTTGGCTATAAGTGGGGTCTTGTTCGTGGGATTACCAGgttaaaatggatatttgccattccaagtatagtt--cttgtacg--cagccgcttgtagcatccttattgattctg-ttttctgtttattgtcctta-aaacag
||||||| |||||||||   ||||| || || ||||||||||||||  ||||||||||  | |||||||| || ||||| |||||||||||| ||  |||||  |  |     | |  | ||||||  |||| |  ||||||    ||  |  || |||  |     | |||| |  |||||  | | |  || ||  || |||
CAGAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGTTGGGTTCAGGCAATCTGTAAACGTTGGCTACAAATGGGGCCTTGTTCGTGGGGTTGGCAGgtgcattt---cctctatccttccaataatagatgtcttgtattatcattctattctagtgtttccttggattttaattttccatctgtcatcttttcaagcag