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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTGCGTATGTTTCCCCCACTGCGCTTGGTACCACCGCAACAACATGCCTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCGgtactactccattttatatttactctctctttattcttgactttaaacataaccttttgttcattaacctcatctcaaaatttagtgcaaatatatgagt...

Basic information

species Oryza sativa
transcript LOC_Os10g42780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42780.6 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G873519_T02 (Zea mays), 5'ss of exon 3
CTGTTGCGTATGTTTCCCCCACTGCGCTTGGTACCACCGCAACAACATGCCTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCGgtac-tactccattttatatttactctctctttattcttgactttaaacataaccttttgttcattaacctcatctcaaaatttagtgcaaatatatgagt
  || || | | |    ||||| ||| |||||||||| |||| |||||||||||||||| |||||||| | | |||  | || |||||  |||||||  ||||  |||      || |||  ||||  ||  |      ||    ||  ||  |  || |||  ||   || |  |      | ||||     |       
GCGTCGCATGTTTCAATCCCACGGCGTTTGGTACCACGGCAAGAACATGCCTTCCTTTCCTGCTTGCTGCTAATGTGCTGGGATACATGGTTGGTTCTGGgtaaatacgtacgcttgtataaactcgatcgatcaataggatcccaagtatg-cagttagtt--ttggactgacgtacggtctgagtgttttcag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660093|gb|CB656368.1|CB656368
EST:     CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCG                         GTTACCATCTGGTGTCAAGAAAGTGCTACACCCAATCATCTGTTGTGCACT
genomic: CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCGgtactactcc ... attctcacagGTTACCATCTGGTGTCAAGAAAGTGCTACACCCAATCATCTGTTGTGCACT
EST: gi|29676078|gb|CB672353.1|CB672353
EST:     CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCG                         GATACCATCTGGTGTCAAGAAAGTGC
genomic: CTTCCTTTCTTGCTTGCTTCCACTGTTTTCGGTTACATCCTTGGTTCCCGgtactactcc ... attctcacagGTTACCATCTGGTGTCAAGAAAGTGC