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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcattcaaccaatgttgctgccatgccatttaattaagctcgcaaccttggtcagagagattcagagtgaacttgacgacctggctgcag

Basic information

species Oryza sativa
transcript LOC_Os10g40030.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g40030.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G464885_T02 (Zea mays), 5'ss of exon 1
AACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtac--aatcattcaac-caatgttgctgccatgccatttaattaagctcgcaaccttggtcagagag-attcagagtgaacttgac--gacctggctgcag
   ||| |||| || ||| | || ||||||||| |||||||||| || ||||| ||||||||||||||||||| ||  ||  ||| ||||||| ||||||||||  ||  |  |    | ||| |  | |  |    ||  |    ||     | |||||  | | |  || ||    | | || |   |   || ||||  
TGGTTCTACCGCAAAGGCTCATCGGGCTTCTCCAGCGCCTCCACGGCTGAGGATGTCACCGCCGGCGTCGACGGCCAAGGTCTGGTCGCCGTCATCACAGgtacttaaaaacacgcttctatgctaatccatttagcttccaccccgcctctgagcttggcgacaaaacatccaagacgtatttcaacgggaatgactgc--

upper sequence: LOC_Os10g40030.4 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G128577_T01 (Zea mays), 5'ss of exon 1
AACTTCAACCGAAATGGCCCCTCTGGCTTCTCCGGCGCCTCCACCGCCGAGGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcattcaaccaatgttgctgccatgc---catttaattaagctcg---caaccttggtcagagagattcagagtgaacttgacgacctggctgcag
   ||| |||| || || ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| ||      ||| ||||||| |||||||||||   | | | |     |  | ||    |   | | | || |    ||   || ||   | | |   |  |  | |  |  |   ||||  | |  |  
TGGTTCTACCGCAAAGGACCCTCCGGCTTCTCTGGCGCCTCCACGGCCGAGGAGGTCACCGCCGGCGTCGACGGCCACCTTCTGGTCGCCGTCATCACAGgtacatatacttacctcgcatcccagctggtcgctcgtatgatcacagccggaccatcccacggcggtcgggctttgtgatatatgagcgacgcgccacc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688731|gb|CK077418.1|CK077418
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
EST: gi|88335213|gb|CI658220.1|CI658220
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
EST: gi|11025705|gb|AU162306.1|AU162306
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCNGTCGTCACAG                         GCGCGTCGA-CGGCATCGGGCTGGAGAAGACGCGCGTGTTGGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCG
EST: gi|88383988|gb|CI631878.1|CI631878
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
EST: gi|86885823|gb|CI295944.1|CI295944
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
EST: gi|11565212|gb|AU165848.1|AU165848
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAACGGGCATCGGGCTGGAGACGAAGCGCGT
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGG-CATCGGGCTGGAGACGACGCGCGT
EST: gi|29656760|gb|CB653035.1|CB653035
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
EST: gi|58593021|gb|CF991329.1|CF991329
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
EST: gi|88402445|gb|CI596306.1|CI596306
EST:     GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAG                         GCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG
genomic: GGAGGTCACCGCCGGCGTCGACGCCCGGGGCTTGGCCGCCGTCGTCACAGgtacaatcat ... ctggctgcagGCGCGTCGAGCGGCATCGGGCTGGAGACGACGCGCGTGTTGGCGCTGCGCG