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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGCAAAGGGGTAGTTCACTCCTGGTTATCTATGAAGCTTTCATCAGAAGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatgtcatacactgtttggtttggtttcatctgttaatgggataatctgtagatatgttgtgtactgtggccaagttttcggtactttgtgctatgtgcacaatgtgatctatctgactcattgaatcatgcag

Basic information

species Oryza sativa
transcript LOC_Os10g38980.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 2
GACTGCAAAGGGGTAGTTCACTCCTGGTTATCTATGAAGCTTTCATCAGAAGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatgtcatacactgtttggtttggtttcatctgttaatgggataatctgtagatatgttgtgtactgtggccaagttttcggtactttgtgctatgtgcacaatgtgatctatctgactcattgaatcatgcag
||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| | || | |||||| |||||||||||||| ||||||||||||||||||| |||||||||||| |  | | | | |       ||  |||||   |||  |  |    | |  || ||     ||||||    | | ||| || |||  ||    ||||                            
GACTGTAAAGGGGTAGTTCATTCCTGGTTATCTATGAAGCTTTCATCAGAGGAAGCTAATAGTGCTTTCAGAGTATTATCTGGTTGCAAGGTGAACAAAGgtaagtgatgtcatactc--tctagatgg-------ctagtaatg---taagtttcattgttatcatgcac-aaaaccaagtgaatgattctt-gttctaaatg----atgtag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218486338|gb|FG949831.1|FG949831
EST:     AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG                         TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: gi|27547665|gb|CA765589.2|CA765589
EST:     AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG                         TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: gi|27920414|gb|CB096222.1|CB096222
EST:     AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG                         TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
EST: gi|58602511|gb|CK013039.1|CK013039
EST:     AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAG                         TTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA
genomic: AGAATCAAACACTGCTTTTAGAGTATTATCTGGCTGCAAGGTGAACAAAGgtatgtgatg ... aatcatgcagTTTGTCCGTTGGAGTTTGATGATCCTTCTTCCGTTGTTAAGGCATGTGGCA