1 5' 3' | 2 5' 3' | 3 5' 3' |
CCAAGAAGCAGCTGAGAAAGAAGCCGCTCTTGCAAGGAGGAGACAAGAGAAGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcacattctttgtccatcttccttatcaacctgttatgatcttattctaggataatgtgctgacaagttacaaccacatttgtctacttttgat...
species | Oryza sativa |
transcript | LOC_Os10g37630.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|88955777|gb|CI092066.1|CI092066
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|89161732|gb|CI100892.1|CI100892
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|86536892|gb|CI177098.1|CI177098
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAGGAAAGGAGATTCAACAGTEST: gi|88978113|gb|CI384595.1|CI384595
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACATTEST: gi|86536571|gb|CI176777.1|CI176777
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAGGAAAGGAGATTCAACAGTEST: gi|88967571|gb|CI014922.1|CI014922
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|88263286|gb|CI367060.1|CI367060
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|89188189|gb|CI115438.1|CI115438
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTGATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|89180514|gb|CI044793.1|CI044793
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|86490064|gb|CI132697.1|CI132697
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|89173517|gb|CI041410.1|CI041410
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|24468678|gb|CA305627.1|CA305627
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|86860794|gb|CI325023.1|CI325023
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAAGTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|86428400|gb|CI075081.1|CI075081
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|4715368|gb|AU056485.1|AU056485
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTNACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|86825459|gb|CI360083.1|CI360083
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: CTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|88246185|gb|CI246034.1|CI246034
genomic: CTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGTEST: gi|86842718|gb|CI341841.1|CI341841
genomic: AGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
EST: CATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGA GTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
genomic: CATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcac ... gattttgtagGTTCTTATAAGATTTCCAACTGGAGAGCGCAAAGAAAGGAGATTCAACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAGAAGCAGCTGAGAAAGAAGCCGCTCTTGCAAGGAGGAGACAAGAGAAGGCCATGGCTCTTGGAGCAGAACCTGAGAAAGGACCAGATGTTACTCGAgtatgttcacattctttgtccatcttccttatcaacctgttatgatcttattctaggataatgtgctgacaagttacaaccacatttgtctacttttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG