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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAGCTCCCCGTTCGAGAGCCTCACCACGGAGAACCTGAGGTTCCTGTCGTCCAAGCAGGCACTGTTCGACCTGGTCGCCTTCCGCCAGCATTACCAGgtcaggattcagatcgacgaaatgcatgaaaaatctccctattcccgtgtaaatcgaactgtttatggtcaaattcatgtgaaattcccctgcgtttcaaatggggataaactatttagcacgtgattttctgatctctctctctctctctctctctctgtgtggttttgttgcttttgtag

Basic information

species Oryza sativa
transcript LOC_Os10g36780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36780.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G082502_T02 (Zea mays), 5'ss of exon 2
CAAGAGCTCCCCGTTCGAGAGCCTCACCACGGAGAACCTGAGGTTCCTGTCGTCCAAGCAGGCACTGTTCGACCTGGTCGCCTTCCGCCAGCATTACCAGgtcaggattcagatcgacgaaatgcatgaaaaatctccctattcccgtgtaaatcgaactgtttatggtcaaattcatgtgaaa-ttcccctgcgtttcaaatggggataaactatttagcacgtgattttctgatctctctctctctctctctctctctgtgtggttttgttgcttttgtag
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GAAGAGTTCTCCATTCAAGCAGCTGACCACCGAGAACCTGAGGTTCCTGTCGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAGgttta-------attaattaattg-gcattgtgttgcctgattca---gcaactcgtgcttcatgtgctggaagaatcgtgagcctttctctgtttttccttt---------ttcttttcccggtag--------------------------------------------------------