1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAAGAGTTCCCCTTTTGAGAGTTTGACAACGGAAAATCTAAGGTTCTTGTCATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAGgtgggcataggaccgtttgtactgtctatgtccaaacgagtgtacctactgatctgagtttggcttctcttatttgaag
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAG GAAACTTTGAATGCTAAGTATAATCGCTCAGGAGCAGACAGTTCTTGGTTTEST: gi|33797174|gb|CF324451.1|CF324451
genomic: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAGgtgggcatag ... ttatttgaagGAAACTTTGAATGCTAAGTATAATCGCTCAGGAGCAGACAGTTCTTGGTTT
EST: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAG GAAACTTTGAATGCTAAGTATAATCGCTCAEST: gi|29678499|gb|CB674774.1|CB674774
genomic: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAGgtgggcatag ... ttatttgaagGAAACTTTGAATGCTAAGTATAATCGCTCA
EST: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAG GAAACTTTGAATGCTAAGTATAATCGCTCAGGAGCAGACAGTTCTTGGTTTEST: gi|33794179|gb|CF322980.1|CF322980
genomic: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAGgtgggcatag ... ttatttgaagGAAACTTTGAATGCTAAGTATAATCGCTCAGGAGCAGACAGTTCTTGGTTT
EST: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAG GAAACTTTGAATGCTAAGTATAATCGCTCAGGAGCAGACAGTTCTTGGTTT
genomic: CATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAGgtgggcatag ... ttatttgaagGAAACTTTGAATGCTAAGTATAATCGCTCAGGAGCAGACAGTTCTTGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAGTTCCCCTTTTGAGAGTTTGACAACGGAAAATCTAAGGTTCTTGTCATCAAAACAGGCCTTGTTTGATCTGGCTGTTTTCCGCCAATATTATCAGgtgggcataggaccgtttgtactgtctatgtccaaacgagtgtacctactgatctgagtttggcttctcttatttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT