1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTATGGCGCCTGGTCCGGGGTATACCTGTAGCCGTGCTATGATTGTGAAGCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGAgtaagtagtccatctgttgttctttttctgaattgctgcttgatgcccaattgcttgtatgtcatgtggaaatgcattaggaacatagactcagttgtga...
species | Oryza sativa |
transcript | LOC_Os10g35460.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGA TGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTCEST: gi|58694373|gb|CK083060.1|CK083060
genomic: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGAgtaagtagtc ... ctattcacagTGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTC
EST: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGCTCTGA TGACATGGAATGTEST: gi|58668035|gb|CK056721.1|CK056721
genomic: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGAgtaagtagtc ... ctattcacagTGACATGGAATGT
EST: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGCTCTGA TGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTCEST: gi|33676386|gb|CF304625.1|CF304625
genomic: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGAgtaagtagtc ... ctattcacagTGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTC
EST: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGA TGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTCEST: gi|88960111|gb|CI381989.1|CI381989
genomic: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGAgtaagtagtc ... ctattcacagTGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTC
EST: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGA TGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTC
genomic: GCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGAgtaagtagtc ... ctattcacagTGACATGGAATGTGATCTGCACATACTCCCAATTTCTTGCACAAAAGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATGGCGCCTGGTCCGGGGTATACCTGTAGCCGTGCTATGATTGTGAAGCCTAGTAGGTTTTTAAGTCCGGATGGGAGGAGGGCGACTCAAGTTCTGAgtaagtagtccatctgttgttctttttctgaattgctgcttgatgcccaattgcttgtatgtcatgtggaaatgcattaggaacatagactcagttgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG