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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACACCTTATGAGGCAGCAGCTGTTGTTTTAGAAGATTATGGACTCCCTTACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgctgaaacttcttaacactcatataacttgcattttgtaaattgcatactgccgtgctacctcaatggagaatctttgtacatttctctttg...

Basic information

species Oryza sativa
transcript LOC_Os10g32730.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g32730.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G027115_T01 (Zea mays), 5'ss of exon 4
AGACACCTTATGAGGCAGCAGCTGTTGTTTTAGAAGATTATGGACTCCCTTACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgctgaaacttcttaacactcatataacttgcattttgtaaattgcatactgccgtgctacctcaa------tggagaatctttgtacatttctctttg
||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||| ||||||| ||||||| ||||||||| ||    || |||||||   ||||  |||   ||   ||    || |  || ||||   |||||  |  |      | |||    ||  || || | | |   
AGACACCTTATGAAGCTGCAGCTGTTGTTTTAGAAGACTATGGACTCCCTTACTCTACAGAAGAGTTCCTCTCGATGATTACTCCGATGTTCAGTGAGCAgtaatgcaa-tggaacttctatgcacttgtatttttt---ttccagaagt--cacactgaaatgctatatgtagaggcctagagggggttgttaaatgtgtttgac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58657262|gb|CK045942.1|CK045942
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29631920|gb|CB636929.1|CB636929
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29687643|gb|CB683918.1|CB683918
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29636237|gb|CB641246.1|CB641246
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29671819|gb|CB668094.1|CB668094
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29658982|gb|CB655257.1|CB655257
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29629324|gb|CB634335.1|CB634335
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCGGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|58688816|gb|CK077503.1|CK077503
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29679504|gb|CB675779.1|CB675779
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29623338|gb|CB628349.1|CB628349
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCGGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|33795313|gb|CF323528.1|CF323528
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
EST: gi|29659012|gb|CB655287.1|CB655287
EST:     TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCA                         ATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT
genomic: TACTCAACAGAAGAATTTCTCTCAATGCTTACTCCAATGTTCAATGAGCAgtactgttgc ... catattgcagATGGTGCAACATAAAAGCTCTTCCTGGAGCTAATCGGTTGATAAAACATTT