Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAGgtaaataacaattttgttaggtaggatcgattgctcaaattataaacatgttgttctgcactgctgtaatttttaagatcatatcttgcagacttgtcca...

Basic information

species Oryza sativa
transcript LOC_Os10g31830.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g31830.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G809265_T02 (Zea mays), 5'ss of exon 3
CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAGgtaaataacaattttgttaggtaggatcgattgctcaaat-tataaacatgttgtt---ctgcactgctgtaatttttaagatcatatcttgcagacttgtcca-
||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||||||   ||| | || |||  ||   | || |||| |||| | |  | || ||||       || |  ||| ||||||   | | |    ||  |  || |  | 
CTGGCCAGGAGAGGTTTAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaa--gacagtatttttac-tacagttgactgcttaaatattttgatatattgtaacatcacattaatgtcatttttgtcaccttga--tgtcggattattgaa

upper sequence: LOC_Os10g31830.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G075051_T01 (Zea mays), 5'ss of exon 3
CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAGgtaaataacaattttgttaggtaggatcgattgctcaaat-tataaacatgttgttctgcactgctgta-atttttaagatcatatcttgcagacttgtcca-
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||   ||||| || |||    | || |  |||| |||| |||  |  |||     ||      | |  |  | |   ||   ||  |  |   |  || | 
CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTCTAGgtaa--gacaatatttttactacgaattgtctgcttaaatatattgat-tgtcaccttgttggattatggaaatatgccatagaatggtataagttgatctat

upper sequence: LOC_Os10g31830.2 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 3
CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAGgtaaataacaattttgttaggtaggatcgattgctcaaattataaacatgttgttctgcactgctgtaatt--tttaagatcatatcttgcagacttgtcca
|||| ||||||||||| || ||| | || || |||||||| |||||||| ||||| |||||||| |||| |  |  | |   | |  |    |   |   | |||||||      |  | | |    |  ||  |||   |  | || |||  ||  ||    | | |
CTGGACAGGAGAGGTTCAGAACATTGACAAGCTCTTACTATAGAGGTGCCCAAGGGATTATTCTTGgtatactatcaatacataaaatcatttatttctttaaaattatgcgttggaagctgtagctttgtgagattggctgcaaattataaatt--aggacagccta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86839153|gb|CI331447.1|CI331447
EST:     TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAG                         GAGGATGAAAGAACTGTCACAAGAGAAGAAGGGCTTGCCTTTGCAGAAGAA
genomic: TAGGACAATTACTAGTTCTTACTACAGAGGTGCTCAAGGCATTATTCTAGgtaaataaca ... tatctttcagGAGGATGAAAGAACTGTCACAAGAGAAGAAGGGCTTGCCTTTGCAGAAGAA