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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTCGAGCCGTATGCGAGAATCGATAGCCCGAAAGGCGTCGTTCTTCTCGCGATCGTCATCCTTGTTCTGTCAAATGTGGCATCAAATGTTCCAACAGgtaaagaaaactttaatttggtactataaatgttcatttttagttggtcaaatattcggagaagtagacacatcatggcacgtgcacacactgttcacct...

Basic information

species Oryza sativa
transcript LOC_Os10g31040.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g31040.4 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S155_46V6.1 (Physcomitrella patens), 5'ss of exon 2
CTCGTCGAGCCGTATGCGAGAATCGATAGCCCGAAAGGCGTCGTTCTTCTCGCGATCGTCATCCTTGTTCTGTCAAATGTGGCATCAAATGTTCCAACAGgtaaagaaaacttta---atttggtactataaatgttcatttttagt----tggtcaaatattcggaga--agtagacacat---catggcacgtgcaca-----cactg-ttcacct----------------------------
   || || ||  ||||    ||   ||   |||  || || |   | ||| |  | ||  |   ||| ||||| ||||||||||| ||||||||||||||||  ||  | ||||   | |     |  ||| || |   | | |||    ||     || |||   |   | | || | ||      | ||  | | ||     ||||| | ||| |                            
GCAGTAGAACCACATGCCCAGATTTCTACTGCGAGCGGGGTAGCCGTACTCTCTCTGGTTGTTACTGTGCTGTCGAATGTGGCATCCAATGTTCCAACAGgtattgattattttataaactgtaagccttaagtgatatatctcagtaccttgcattgattttcttcgcccaattgatatatatgtccgacatatactcaagttacactgatccacttactttcgattgtttgtgttgatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33680059|gb|CF308298.1|CF308298
EST:     CGCGATCGTCATCCTTGTTCTGTCAAATTTGGCATCAAATGTTCCAACAG                         TTCTACTGCTGGGCACAAGAGTGGCAGCATCAGCCGCAGCGATCTCCCCTG
genomic: CGCGATCGTCATCCTTGTTCTGTCAAATGTGGCATCAAATGTTCCAACAGgtaaagaaaa ... gcaatttcagTTCTACTGCTGGGCACAAGAGTGGCAGCATCAGCCGCAGCGATCTCCCCTG