1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATgtatgccaggaccttgtgatggtggcgtggtgcacattgattgtgttttgtgtgtgatgaagctgaaaggtgttttctgtctctgttctttgcag
species | Oryza sativa |
transcript | LOC_Os10g30640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGAT TGAGCTCCGGGGAATTTGGCCTGGATGTTGAAGATTACCTTACTGEST: gi|86422591|gb|CI060164.1|CI060164
genomic: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATgtatgccagg ... ttctttgcagTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG
EST: TGAGACCGGCGGCCTCCTCATGCAC-CCGAGGCCCAGGAGAAGCTAGGAT TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGEST: gi|86423143|gb|CI060716.1|CI060716
genomic: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATgtatgccagg ... ttctttgcagTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG
EST: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGAT TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGEST: gi|87005237|gb|CI283460.1|CI283460
genomic: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATgtatgccagg ... ttctttgcagTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG
EST: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGAT TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTGEST: gi|58686021|gb|CK074708.1|CK074708
genomic: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATgtatgccagg ... ttctttgcagTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG
EST: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGAT TGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG
genomic: TGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATgtatgccagg ... ttctttgcagTGAGCTCCGGGGAGTTTGGCCTGGATGTTGAAGATTACCTTACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGCGAGACGCAGGCGGTGGTGTCGATGCTCGCCTTCATGCACTGGCTTGAGACCGGCGGCCTCCTCATGCACGCCGAGGCCCAGGAGAAGCTAGGATgtatgccaggaccttgtgatggtggcgtggtgcacattgattgtgttttgtgtgtgatgaagctgaaaggtgttttctgtctctgttctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC