1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatgagaacatttcttttacagaccttgtgctttaccttgaatcccttaaactttgactgacttcatcagtgggaaaatgtag
species | Oryza sativa |
transcript | LOC_Os10g28320.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACT ATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGEST: gi|29661845|gb|CB658120.1|CB658120
genomic: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatga ... gaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTG
EST: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACT ATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGCEST: gi|29687719|gb|CB683994.1|CB683994
genomic: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatga ... gaaaatgtagATGGGAGAACTAAAGAAGTTGGTGGAAGAAGGTAAAGTTAAATTTGTTGGC
EST: ATCTGAACTATCAGCATCGCATTGACCAGTCAGTACCCATACAGGAAACT GEST: gi|29687719|gb|CB683994.1|CB683994
genomic: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatga ... gaaaatgtag-
EST: ATCTGAACTATCAGCATCGCATTGACCAGTCAGTACCCATACAGGAAACT GEST: gi|29687719|gb|CB683994.1|CB683994
genomic: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatga ... gaaaatgtag-
EST: ATCTGAACTATCAGCATCGCATTGACCAGTCAGTACCCATACAGGAAACT GEST: gi|29687719|gb|CB683994.1|CB683994
genomic: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatga ... gaaaatgtag-
EST: ATCTGAACTATCAGCATCGCATTGACCAGTCAGTACCCATACAGGAAACT GEST: gi|29687719|gb|CB683994.1|CB683994
genomic: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatga ... gaaaatgtag-
EST: ATCTGAACTATCAGCATCGCATTGACCAGTCAGTACCCATACAGGAAACT G
genomic: ATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatga ... gaaaatgtag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTGCATGCTGTGAAGCAAGCCTTGAGCGCCTTGCTGTTGACTACATTGATCTGTACTATCAGCATCGCATTGACCAGTCAGTACCCATAGAGGAAACTgtgtgtatgagaacatttcttttacagaccttgtgctttaccttgaatcccttaaactttgactgacttcatcagtgggaaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA