Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag

Basic information

species Oryza sativa
transcript LOC_Os10g28200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 3
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagt--gttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag
||||||||||||||| |||||||||||||||||||| |||||||||||||| || || || ||| ||||||||||||||||||||||||||||||| ||| |||| |||||   | | | |   ||  ||||    |   || |  || ||  | | | ||  | || |||    |  | |||
GTTCTTCTATGCCTCGAGTGCATGCATTTACCCTGAGTTCAAGCAGCTTGACACAAATGTGAGCTTGAAGGAATCTGATGCCTGGCCTGCTGAGgtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatatacagtca-aatctaaatcccctcggtgtta----cgtttcag

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtc-------catcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag----------
||| || |||||||| ||||| || || || || |||||||| ||| | || || || || ||  | ||||| |||||||||||||||||||||||||||        | |  || || || |     ||| | |  |  || | |  ||  |  | ||   ||   |  | | ||  || | |              
GTTTTTTTATGCCTCTAGTGCTTGTATCTATCCGGAATTCAAACAGTTGGAGACAAATGTGAGTTTAAAGGAGTCTGATGCCTGGCCTGCTGAGgtttgttgctgattcttttaattagttgttcaacttattctggttattcacttgaa--aatacttaggttagcagggatatatttaatatttgactttttatag

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA20G36740.2 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaat---aattttaggcttta-----gtgttatgtttt---agtaaaaccagaagttgatttcctactgttttaactactgtccag
||| || |||||||| ||||| || || |||||||||||||| ||| | |||||||| |||||| ||||||| |||||||| ||||| ||||||||||||   | |   |   |||| |    ||||     ||  |   ||||   | |   |   | | |    |   || | || | |||  | |  ||
GTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTCAAACAGTTGGAAACTAATGTTAGCTTGAAGGAGTCTGATGCATGGCCAGCTGAGgtttgttggtgatcttttcaattgttcaatttatgttggttcttgattttcacattgggattgggattaatgtgtttaattttgtgactgtt-tttag

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtc-------catcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag----------
||| || |||||||| ||||| || || || ||||||||||| ||| | || || || || ||  ||||||| |||||||||||||||||||||||||||        | |  || || || |     ||| | |  |  || | |  ||  |  | ||   ||   |  | | ||  || | |              
GTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAACAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGgtttgttgctgattcttttaattagttgttcaacttattctggttattcacttgaa--aatacttaggttagcagggatatatttaatatttgactttttatag

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatca------aaataattttag--gctttagtgttatgtttt---agtaaaaccagaagttgatttcctactgttttaactactgtccag
||| || |||||||| ||||| || || ||||||||||| || ||| | |||||||| || ||| ||||||| || ||||| ||||| ||||||||| ||   | |       |||  ||  |      || ||  |   ||||   | |   |   | | |   ||   || | || | |||  | |  ||
GTTTTTTTATGCCTCTAGTGCTTGTATCTACCCTGAATTTAAACAGTTGGAAACTAATGTGAGCTTGAAGGAGTCCGATGCATGGCCAGCTGAGgttagttggtgatcttttgaattgttcaatttatgttggttcttgattttcacattgggattgggattaatttgtttaattttgtgactttt-tttag

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 3
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtc-------catcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag---------
||| || |||||||| ||||| || || || ||||||||||||||| | || || || || ||  ||||||| ||||||||||||||||||||||| |||        | |  || || || |     ||| | |  |  || | | |||  |  | ||    |   |  | | ||  || | |             
GTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAGCAGTTGGAGACAAATGTGAGTTTGAAGGAGTCTGATGCCTGGCCTGCTGAGgtatgttgctgattctttgaattacttgttcaagttattctggttattcacttaaa--aatacttaggctagcagggatatatttaatttttgacttttatag

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGC---CTGAAGGAATCTGATGCCTGGCCTGCTGAGgttt-gtccatcaaaa--taattttaggctttagtgttatgttttagtaaaaccagaagtt-gatttcctactgttttaactactgtccag---------
||| |||||||||||||| || ||||||||||||||||||||||| || |||||| | || |||    ||||||| |||||||| ||||| |||  ||| | ||   || |    || |   | |   | ||| | | |  | | ||  | |    || | |  |||   |   |      ||| | |         
GTTTTTCTATGCCTCAAGCGCGTGCATTTACCCTGAATTCAAGCAACTCGAAACTGATGTGAGCAGTTTGAAGGAGTCTGATGCGTGGCCCGCTCTGgtatagtttctctacccttagtgggaagaacttgtggtctatgattgaaagtctactcctttggtgaccttgagggattcgcgttgttcgggaaattcga

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCC---TGAAGGAATCTGATGCCTGGCCTGCTGAGgt---------ttgtccatcaaa--ataattttaggctttagtgttatgttttag--taaaaccagaagttgatttcctactgtt--ttaactactgtccag
||| |||||||||||||| || || ||||||||||| ||||||||||| || ||| | || |||    |||| ||||| ||||| |||||||||  |||         || | | | | |  | |   | ||  || | ||     || |    |   ||  |   ||  |||||| |  ||  |    |  | |||  
GTTTTTCTATGCCTCAAGCGCGTGTATTTACCCTGAGTTCAAGCAGCTGGAGACTGATGTGAGCTCTTTGAAAGAATCGGATGCTTGGCCTGCTCTGgtacagtaaattttttccttagaggagaggatcagtgttcaatgagtgattatgagttctcactgggtttttttttcctgcgattcgtcttttgttatcc--

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag
 || || ||||| || ||||||||||||||||| || || |||||||| || |||||||| ||  ||||||| || ||||| ||||| || ||||| ||   |  |||| ||    | ||||   | || | ||   |  || |   ||    ||| |    ||                 
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAGgtatgaaaacgaaaaaaaa---aagcttc--ttttcttttgcggggaatctgaaaaaaaattgcactttgcag--------------

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ12864 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag
||| |||||||| || || |||||||||||||| ||||||||||| |||||||| ||||| || || |||||||| ||||| ||||| || ||||| ||          |  |   ||     |      |||||   | ||||     |||  |||| |  || | |  |||        
GTTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAAACGAACGTGAGTCTCAAGGAATCGGATGCTTGGCCAGCAGAGgtatgct-------gtcttccaagaaaaaaacaacttgtttc--tcaaactttttgtt--tttcatgttgctctttctag-------

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag
 || || ||||| || ||||||||||||||||| || || |||||||| || |||||||| ||  ||||||| || ||||| ||||| || || || ||   |  |||| ||    |     |  |  | | || | |  || |   ||    | ||   ||| ||  |            
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCAGCAGAAgtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttgtggggaatctgaaa---aaatttgcact-ttgcag-----------

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ10353 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag
 || || ||||| || ||||||||||||||||| || || |||||||| || |||||||| ||  ||||||| || ||||| ||||| || ||||| ||   |  |||| ||    |    ||    ||   |||  |   || | |||    | ||   ||| ||  |            
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAGgtatgaaaaagaaaaaaacaaaaaagctt--cttttcttttgcggggaatctgaaa--aaatttgcact-ttgcag-----------

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ18599 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagta---aaaccagaagttgatttcctactgttttaactactgtccag
 || || ||||| || ||||||||||||||||| || || |||||||| || |||||||| ||  ||||||| || ||||| ||||| || ||||| ||   |  |||| ||    |       ||  | |  ||| ||    || | | ||    ||| |    ||                 
ATTTTTTTATGCGTCCAGTGCATGCATTTACCCCGAGTTTAAGCAGCTGGAGACTAACGTGAGTTTGAAGGAGTCAGATGCATGGCCGGCAGAGgtatgaaaaagaaaaaaaaaaaaaaaaaaggttcttttcttttgtggggaatctaaaaacaaattgcactttgcag--------------

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ09286 (Selaginella moellendorffii), 5'ss of exon 2
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag
 || |||||||| || || |||||||||||||| ||||||||||| |||||||| ||||| || || |||||||| ||||| ||||| || ||||| ||          |  |   ||     |      |||||   | ||||     |||  |||| |  || | |  |||        
ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAAACGAACGTGAGTCTCAAGGAATCGGATGCTTGGCCAGCAGAGgtatgct-------gtcttccaagaaaaaaacaacttgtttc--tcaaactttttgtt--tttcatgttgctctttctag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642006|gb|CB647013.1|CB647013
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29663379|gb|CB659654.1|CB659654
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29639582|gb|CB644591.1|CB644591
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29662156|gb|CB658431.1|CB658431
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|33795601|gb|CF323670.1|CF323670
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29612786|gb|CB617799.1|CB617799
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29663824|gb|CB660099.1|CB660099
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29638323|gb|CB643332.1|CB643332
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29656907|gb|CB653182.1|CB653182
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|33693065|gb|CF321304.1|CF321304
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGA
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGA
EST: gi|58691767|gb|CK080454.1|CK080454
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|88367131|gb|CI563895.1|CI563895
EST:     AGCTTGGAACTAACGCTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTGTGGAGAAGCTCGCAACTGAAGAAGCTCTGCA-
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGA-GCTCTGCAA
EST: gi|29676976|gb|CB673251.1|CB673251
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|33796923|gb|CF324325.1|CF324325
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTA
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTA
EST: gi|29668588|gb|CB664863.1|CB664863
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29656792|gb|CB653067.1|CB653067
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29663088|gb|CB659363.1|CB659363
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29662817|gb|CB659092.1|CB659092
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGCCCTGCTGAG                         CCTCAAAATGC
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGC
EST: gi|58590748|gb|CF989056.1|CF989056
EST:     AGCTTGAAACTAACGTTAGGCGGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|2310372|gb|C26527.1|C26527
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|58677087|gb|CK065774.1|CK065774
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29669312|gb|CB665587.1|CB665587
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|86830786|gb|CI293774.1|CI293774
EST:     AGC-TGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29662150|gb|CB658425.1|CB658425
EST:     ATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: ATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|117230143|gb|CT846231.1|CT846231
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29680859|gb|CB677134.1|CB677134
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29638695|gb|CB643704.1|CB643704
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29657346|gb|CB653621.1|CB653621
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|13420521|gb|AU174611.1|AU174611
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|8858460|gb|AU095778.1|AU095778
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29688060|gb|CB684335.1|CB684335
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29641880|gb|CB646887.1|CB646887
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
EST: gi|29672449|gb|CB668724.1|CB668724
EST:     AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAG                         CCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG
genomic: AGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 64 (downstream exon)
Score: 29

GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccat ... tactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAGCACTACACCAAGGACTTTGGCATTGAGTGCCGTGTTGGCCGCTTCCACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTCTATGCCTCAAGTGCATGCATTTACCCTGAATTCAAGCAGCTTGAAACTAACGTTAGCCTGAAGGAATCTGATGCCTGGCCTGCTGAGgtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA