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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATACCGTTCGCCTTCAAAAGAGTTGATGTTATGCTATACCGAGCAAATTTTGAGAATGAAGTGAATTATCTCAGGAAATCTTTTCAAACGCTTGAGgtattgcagttcacgttgtatttgtctctatcatgggttactgcattaacatatattgttatatgccatcatttactgcataaaactaatactccataaa...

Basic information

species Oryza sativa
transcript LOC_Os10g20710.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g20710.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G090693_T01 (Zea mays), 5'ss of exon 3
TGATATACCGTTCGCCTTCAAAAGAGTTGATGTTATGCTATACCGAGCAAATTTTGAGAATGAAGTGAATTATCTCAGGAAATCTTTTCAAACGCTTGAGgtattgcagttcacgttgtatttgtctctatcatgggttactgcattaacatatattgttatatgccatcatttactgcataaaactaatactccataaa--
||| ||||| ||  | |||||||||||||||| |||||| || ||||||||||||||||  ||| | ||||| ||||||||||||||  ||||  | |||||||    |||||| ||| ||  ||   ||   | | ||     || |       |    ||    ||  | ||  | || | ||||   |   | |  |  
TGACATACCTTTTTCTTTCAAAAGAGTTGATGCTATGCTCTATCGAGCAAATTTTGAGAGCGAAATCAATTACCTCAGGAAATCTTTCGAAACATTAGAGgtatgctggttcactttgcata-gtacgtactgtagtttctattatcagtg-gcttgcacatgaatcagtaattgtttcacataactgtcatagcgtggaac

upper sequence: LOC_Os10g20710.1 (Oryza sativa), 5'ss of exon 3
lower sequence: Vv07s0129g00220.t01 (Vitis vinifera), 5'ss of exon 3
TGATATACCGTTCGCCTTCAAAAGAGTTGATGTTATGCTATACCGAGCAAATTTTGAGAATGAAGTGAATTATCTCAGGAAATCTTTTCAAACGCTTGAGgtattgcagttcacgttgtatttgtctctatcatgggttactgcatt----aacatatattgttatatgccatcatttactgcataaaactaatactcc-ataaa
 ||||| || |  || |||||||||||||| |  ||||||||| |||| |||||||| |  ||||| || || || ||||| || |||||||| || |||||||||      |     | | |  | | ||      ||  |  |||       | | |   ||   |||| ||||||  |    |   | |  | ||| ||   
CGATATCCCATATGCATTCAAAAGAGTTGAAGCCATGCTATACAGAGCCAATTTTGATACAGAAGTAAAATACCTGAGGAAGTCCTTTCAAACCCTAGAGgtattgtcaacaata--atttctagcccaattgcatctttttaaattctatgctaaacaagattcagtgcc-tcattttatcttgatctccagcaatcccatg--