1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttacgcccattcttttcttcatcatatttatttacaaacttgagattaatcctttggagacagtggcatagcagattgtggaattcttatgttt...
species | Oryza sativa |
transcript | LOC_Os09g36670.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCGAATTGTCATTGGCCTT-ATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|88570043|gb|CI661218.1|CI661218
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCACAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|88328504|gb|CI676714.1|CI676714
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|88580780|gb|CI697732.1|CI697732
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTNGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|58597588|gb|CK008116.1|CK008116
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGEST: gi|58601241|gb|CK011769.1|CK011769
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|87005928|gb|CI289345.1|CI289345
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|88419577|gb|CI686794.1|CI686794
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGGAGAAGEST: gi|88307256|gb|CI641892.1|CI641892
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAGGAGAAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCACAAACAGTGG CCAATTTTAGGGCTCTTTGTACAGEST: gi|88580485|gb|CI697419.1|CI697419
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|88581910|gb|CI699127.1|CI699127
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|88335390|gb|CI650355.1|CI650355
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAGEST: gi|58691487|gb|CK080174.1|CK080174
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
EST: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTG CAAATTTTAGGGCTCTTTGTACAG
genomic: GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttac ... cattttgcagCAAATTTTAGGGCTCTTTGTACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGAATTGTCATTGGCCTTTATGGAGATGTTGTGCCAAAAACAGTTGgtaatcttacgcccattcttttcttcatcatatttatttacaaacttgagattaatcctttggagacagtggcatagcagattgtggaattcttatgttt
- - - - - - - - - - - TGGAGA
- - - - - - - - - - - GGAGAT
- - - - - - - - - - - - GAGATG