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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaaccttctctccactttctggcctgtaccatttgttataggatgcccttatcgaacaaccaaagttgtcattttgcattgggacttagttagcagg...

Basic information

species Oryza sativa
transcript LOC_Os09g32680.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88672189|gb|CI726305.1|CI726305
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|218486157|gb|FG964429.1|FG964429
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|38568817|gb|CD671032.1|CD671032
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88573905|gb|CI665674.1|CI665674
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|87024052|gb|CI291705.1|CI291705
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88670127|gb|CI724243.1|CI724243
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88761182|gb|CI770738.1|CI770738
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88345571|gb|CI629832.1|CI629832
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88672567|gb|CI726683.1|CI726683
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88313296|gb|CI594926.1|CI594926
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88309145|gb|CI654764.1|CI654764
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88694968|gb|CI739006.1|CI739006
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88390329|gb|CI607365.1|CI607365
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88909071|gb|CI718379.1|CI718379
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88826715|gb|CI777280.1|CI777280
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88732334|gb|CI755511.1|CI755511
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAG
EST: gi|88368731|gb|CI645189.1|CI645189
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88828064|gb|CI778629.1|CI778629
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88387197|gb|CI580542.1|CI580542
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGGTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88306131|gb|CI636509.1|CI636509
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88332007|gb|CI642232.1|CI642232
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|58688702|gb|CK077389.1|CK077389
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88360541|gb|CI608393.1|CI608393
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88372851|gb|CI640302.1|CI640302
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88959445|gb|CI716814.1|CI716814
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAGAAAGAG
EST: gi|88739887|gb|CI761397.1|CI761397
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88571405|gb|CI662778.1|CI662778
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88389465|gb|CI600634.1|CI600634
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88574567|gb|CI666336.1|CI666336
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88362226|gb|CI608617.1|CI608617
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88958928|gb|CI685739.1|CI685739
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88669768|gb|CI723884.1|CI723884
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88741845|gb|CI764350.1|CI764350
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88290448|gb|CI665237.1|CI665237
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88377693|gb|CI605528.1|CI605528
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88300294|gb|CI584713.1|CI584713
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88395660|gb|CI590675.1|CI590675
EST:     ATATCTGGCGATTGGCACAAAAGGTGAAAGTTAGACAAAG                         GGTGATAGCTAGTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|58598688|gb|CK009216.1|CK009216
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|58657666|gb|CK046346.1|CK046346
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88360472|gb|CI608398.1|CI608398
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAA-G                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88351442|gb|CI627458.1|CI627458
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88828105|gb|CI778670.1|CI778670
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|29660227|gb|CB656502.1|CB656502
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88671988|gb|CI726104.1|CI726104
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88320137|gb|CI644729.1|CI644729
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88576455|gb|CI670600.1|CI670600
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88739870|gb|CI761380.1|CI761380
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88594716|gb|CI714674.1|CI714674
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88430967|gb|CI571957.1|CI571957
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|218483409|gb|FG950971.1|FG950971
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|218503593|gb|FG957186.1|FG957186
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88594838|gb|CI714796.1|CI714796
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88673257|gb|CI726032.1|CI726032
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88590333|gb|CI709179.1|CI709179
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88300562|gb|CI587366.1|CI587366
EST:     ATATCTGGCGATTGGAACAACAGGTGAAAGTTAGAAAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88737852|gb|CI760991.1|CI760991
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88743374|gb|CI766882.1|CI766882
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|58592302|gb|CF990610.1|CF990610
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88743467|gb|CI766975.1|CI766975
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88396093|gb|CI595641.1|CI595641
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|58601384|gb|CK011912.1|CK011912
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88972652|gb|CI717378.1|CI717378
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88303299|gb|CI668947.1|CI668947
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|27547661|gb|CA765583.2|CA765583
EST:     ATATCTGGCGATTGGCACAACAGGTGAAGGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|58694573|gb|CK083260.1|CK083260
EST:     ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG
EST: gi|88300050|gb|CI580111.1|CI580111
EST:     ATATCTGGCGATTGGAACAACAGGTGAAAGTTAGACAAAG                         GGTGATAGCTAGTGCTGTTACTTATTTCAGGCGTGTATACACAAG
genomic: ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 40 (upstream exon), 45 (downstream exon)
Score: 40

ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaacctt ... gtattttcagGGTGATAGCTACTGCTGTTACTTATTTCAGGCGTGTATACACAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAGgttaaaccttctctccactttctggcctgtaccatttgttataggatgcccttatcgaacaaccaaagttgtcattttgcattgggacttagttagcagg

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