1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAGgtgagggggatcccatcggtcgaacaccttgtgtgctatactccatgattggttttttcccctgtttgggttcattttggctgctgctgctgccatggaa...
species | Oryza sativa |
transcript | LOC_Os09g31300.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAG CAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGEST: gi|29669314|gb|CB665589.1|CB665589
genomic: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAGgtgaggggga ... ttacttgcagCAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAG
EST: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAG CAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGEST: gi|29657039|gb|CB653314.1|CB653314
genomic: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAGgtgaggggga ... ttacttgcagCAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAG
EST: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAG CAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAGEST: gi|29669315|gb|CB665590.1|CB665590
genomic: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAGgtgaggggga ... ttacttgcagCAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAG
EST: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAG CAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAG
genomic: TCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAGgtgaggggga ... ttacttgcagCAAACCAACACTGCTGACATGTTGGATCTTGCCGTGGACTACATCAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGGAGGACGCGGATCAGCGAGCGGATACGGAAGCTGCAGGAGCTCGTCCCCAACATGGAAAAGgtgagggggatcccatcggtcgaacaccttgtgtgctatactccatgattggttttttcccctgtttgggttcattttggctgctgctgctgccatggaa
- - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA