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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGgtaggttgtttatgcatgttgttctctttgaagctcagttttacataagatggaaatcaaatcttgatagaatcacggatcttcttttaggagattactc...

Basic information

species Oryza sativa
transcript LOC_Os09g29470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g29470.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G115304_T01 (Zea mays), 5'ss of exon 3
GATTGATATCCACCTATCATCAGAAATATCTGATGGAAATCTTCCTGCAAATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGgtaggttg----tttatgcatgttgttctctttgaagctcagtttta--cataagatgg------aaatcaaatcttgatagaatcacggatcttcttttaggagattactc
||||||||| || || ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||   |||||||| |||| ||| || |    |||     |    ||| ||||  | |||  | ||   ||||| || |      | || || | ||  ||| ||  |  || | ||| |            
GATTGATATTCAACTGTCAACAGAAATATCTGATGGAAGTCTTCCTTCAAATCCTCAAAAGGCAATCATATATCATCCTACAGCCGCTCATCTTTTAGCAgtatgtggccactttgattgttcctttcccttttgaactccatcttgtgcataatattggcagacacatgaacttttcgtaggattgcatatttccttgt------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623683|gb|CB628694.1|CB628694
EST:     ATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCG                         GTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTC
genomic: ATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGgtaggttgtt ... gtaatttcagGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTC
EST: gi|29637839|gb|CB642848.1|CB642848
EST:     ATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCG                         GTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTC
genomic: ATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGgtaggttgtt ... gtaatttcagGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTC
EST: gi|58673945|gb|CK062631.1|CK062631
EST:     ATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCG                         GTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTC
genomic: ATCCTCAAAAGGCAATCATATATCATCCTACAGTATCTCATCTTCTAGCGgtaggttgtt ... gtaatttcagGTTCTAGCCACAGTCTGTGAGGAGCTTTCTCAAGATAGCATCTTACTTGTC