1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctttcgtcgtttgtttatgtcaaatgtgtgcccttgacacttttctctgtttttacagttacaactataataaatgtcaagataacgctatgt...
species | Oryza sativa |
transcript | LOC_Os09g28310.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCAGATATCATGGAAATGCAGAAAAATGAG GTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTGEST: gi|40490325|gb|BX899870.1|BX899870
genomic: GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctt ... ctgcttatagGTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
EST: GCAGATATCATGGAAATGCAGAAAAATGAG GTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTGEST: gi|29661120|gb|CB657395.1|CB657395
genomic: GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctt ... ctgcttatagGTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
EST: GCAGATATCATGGAAATGCAGAAAAATGAG GTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTGEST: gi|86484495|gb|CI127128.1|CI127128
genomic: GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctt ... ctgcttatagGTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
EST: GCAGATATCATGGAAATGCAGAAAAATGAG GTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTGEST: gi|33799976|gb|CF325856.1|CF325856
genomic: GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctt ... ctgcttatagGTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
EST: GCAGATATCATGGAAATGCAGAAAAATGAG GTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTGEST: gi|86496364|gb|CI138997.1|CI138997
genomic: GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctt ... ctgcttatagGTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
EST: GCAGATATCATGGAAATGCAGAAAAATGAG GTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTGEST: gi|86593238|gb|CI257878.1|CI257878
genomic: GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctt ... ctgcttatagGTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
EST: AAACAGGCAGATATCATGGAAATGCAGAAAAATGAG GTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
genomic: AAACAGGCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctt ... ctgcttatagGTAGAAGAAATGATAAAGGATCCATTTGGAAGAAGGAAGAGACTTTGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGATATCATGGAAATGCAGAAAAATGAGgtaattgctttcgtcgtttgtttatgtcaaatgtgtgcccttgacacttttctctgtttttacagttacaactataataaatgtcaagataacgctatgt
- - - - CATGGA