1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctactgaaatggcatgattccgacagccgcagcgatagaaaatcgattattgatcagttgttctgataaattatag
species | Oryza sativa |
transcript | LOC_Os09g24570.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGACEST: gi|88422549|gb|CI571531.1|CI571531
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGACEST: gi|88397836|gb|CI583154.1|CI583154
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGACEST: gi|88592426|gb|CI710528.1|CI710528
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGEST: gi|88430811|gb|CI596925.1|CI596925
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGG
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGACEST: gi|88444947|gb|CI696389.1|CI696389
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGACEST: gi|88433774|gb|CI582096.1|CI582096
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGACEST: gi|88315799|gb|CI617272.1|CI617272
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGACEST: gi|88403849|gb|CI611504.1|CI611504
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
EST: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACG GGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
genomic: ATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctact ... taaattatagGGGTACCTTTGGAACCCACTGGATATATCCAAGTATTTCTTGATGGTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAACGAACAAAAGAGAGAGCTGTGGTCACCATTGCCGTACCAAGGTTGGAAACCATGCTTGAAGTCATCAAGTGTTCACGgtaacctactgaaatggcatgattccgacagccgcagcgatagaaaatcgattattgatcagttgttctgataaattatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG